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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.4 nTPM
HPA:20.4 nTPM
GTEx:19.6 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:19.6 nTPM
Mouse:25.9 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.3
2411 Female, age 72, unknown 21.4
1830 Male, age 51, unknown 20.9
1833 Male, age 53, unknown 20.0
1870 Female, age 42, unknown 19.7
2019 Male, age 18, unknown 19.1
2219 Male, age 76, both hemispheres 18.8
2828 Female, age 72, unknown 17.2
1827 Male, age 72, unknown 17.1
2666 Male, age 74, left hemisphere 16.6
2586 Male, age 75, left hemisphere 12.2
Dorsal raphe nucleus
nTPM: 16.4
2750 Male, age 76, both hemispheres 18.5
2016 Female, age 72, unknown 16.7
1828 Male, age 53, unknown 16.6
2047 Male, age 72, unknown 15.8
2298 Female, age 72, unknown 14.2
Inferior colliculus
nTPM: 18.5
1890 Male, age 53, unknown 19.2
2849 Male, age 72, unknown 18.5
1848 Female, age 42, unknown 18.3
2097 Female, age 72, unknown 17.9
Median raphe nucleus
nTPM: 16.7
2220 Male, age 76, midline 16.7
Pedunculopontine tegmental nucleus
nTPM: 18.8
1921 Female, age 85, both hemispheres 19.9
2334 Male, age 80, both hemispheres 18.5
2338 Male, age 61, both hemispheres 18.1
Periaquaductal grey, anterior
nTPM: 16.0
1947 Male, age 18, unknown 19.0
2502 Female, age 75, unknown 14.8
1795 Male, age 51, unknown 14.2
Periaquaductal grey, dorsal
nTPM: 17.3
1840 Male, age 53, unknown 18.2
2464 Female, age 72, unknown 17.8
1831 Male, age 72, unknown 17.5
2850 Male, age 76, both hemispheres 15.8
Periaquaductal grey, lateral
nTPM: 15.7
2272 Male, age 74, both hemispheres 16.3
2053 Male, age 18, unknown 16.2
2140 Male, age 76, both hemispheres 14.7
Pretectal area
nTPM: 17.1
2316 Male, age 76, right hemisphere 18.6
1815 Male, age 53, unknown 18.0
2007 Male, age 72, unknown 17.5
1817 Female, age 42, unknown 17.3
1944 Female, age 72, unknown 17.3
2273 Male, age 74, both hemispheres 17.2
2224 Female, age 72, unknown 16.8
2667 Female, age 75, unknown 16.7
1816 Male, age 51, unknown 16.5
2825 Male, age 18, unknown 16.4
2407 Male, age 75, both hemispheres 16.3
Red nucleus
nTPM: 20.4
2725 Female, age 75, unknown 23.2
2823 Male, age 76, right hemisphere 22.6
1954 Female, age 42, unknown 21.9
1821 Female, age 72, unknown 21.6
2503 Female, age 72, unknown 21.5
1865 Male, age 51, unknown 20.6
2227 Male, age 72, unknown 20.4
1904 Male, age 53, unknown 20.1
2588 Male, age 74, left hemisphere 19.8
2785 Male, age 18, unknown 18.4
2769 Male, age 72, unknown 18.0
2584 Male, age 75, left hemisphere 16.2
Substantia nigra
nTPM: 17.7
2409 Female, age 72, unknown 24.9
2241 Male, age 72, unknown 20.4
1889 Female, age 72, unknown 19.2
2590 Female, age 75, unknown 18.3
2583 Male, age 75, right hemisphere 17.3
1851 Male, age 51, unknown 17.2
1941 Male, age 53, unknown 15.9
2699 Male, age 18, unknown 15.5
2665 Male, age 74, both hemispheres 14.4
1916 Female, age 42, unknown 13.8
Superior colliculus
nTPM: 17.9
1895 Male, age 76, right hemisphere 22.7
1913 Female, age 42, unknown 21.0
2587 Male, age 74, left hemisphere 18.4
1995 Male, age 72, unknown 17.9
2087 Female, age 72, unknown 17.9
2261 Male, age 18, unknown 17.8
1839 Male, age 51, unknown 17.5
1796 Male, age 53, unknown 16.3
2668 Female, age 75, unknown 16.1
2664 Male, age 75, both hemispheres 13.1
Ventral tegmental area
nTPM: 16.8
2223 Female, age 72, unknown 18.1
2410 Female, age 72, unknown 17.6
1942 Male, age 51, unknown 17.0
1915 Female, age 42, unknown 16.2
2218 Male, age 76, both hemispheres 16.2
2021 Male, age 53, unknown 15.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.6
Samples: 139

Max nTPM: 38.0
Min nTPM: 9.6
Std nTPM: 5.2
Median nTPM: 18.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 37.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 33.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 33.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 32.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 31.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 29.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 29.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 29.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 29.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 29.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.2
FF:10158-103A5 76 years, female 51.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.6
Pig sample Sample description nTPM
Midbrain
nTPM: 19.7
Samples: 4

Max nTPM: 20.6
Min nTPM: 18.6
Sample A Female 20.0
Sample B Female 20.6
Sample C Male 18.6
Sample D Male 19.4
Periaqueductal gray
nTPM: 18.5
Samples: 3

Max nTPM: 19.8
Min nTPM: 17.0
Sample B Female 18.6
Sample C Male 19.8
Sample D Male 17.0
Substantia nigra
nTPM: 18.4
Samples: 4

Max nTPM: 21.0
Min nTPM: 16.7
Sample A Female 21.0
Sample B Female 16.7
Sample C Male 19.1
Sample D Male 16.8
Superior colliculi
nTPM: 18.3
Samples: 4

Max nTPM: 19.8
Min nTPM: 16.5
Sample A Female 19.8
Sample B Female 16.5
Sample C Male 17.7
Sample D Male 19.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 28.1
Min nTPM: 20.9
Sample A Male 26.3
Sample B Male 28.1
Sample C Female 28.1
Sample D Female 20.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
150 Antisense, RP_Baylor_103346, Mouse strain C57BL/6J (56 days, male) 0.5
149 Antisense, RP_Baylor_103346, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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