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GLG1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.0 nTPM
HPA:29.0 nTPM
GTEx:35.5 nTPM
FANTOM5:167.8 Scaled Tags Per Million
Pig:52.4 nTPM
Mouse:61.5 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.6
2586 Male, age 75, left hemisphere 28.8
2828 Female, age 72, unknown 27.9
2666 Male, age 74, left hemisphere 27.3
1870 Female, age 42, unknown 26.9
2019 Male, age 18, unknown 26.0
2411 Female, age 72, unknown 25.7
1827 Male, age 72, unknown 25.3
1833 Male, age 53, unknown 24.0
1830 Male, age 51, unknown 23.9
2219 Male, age 76, both hemispheres 20.3
Dorsal raphe nucleus
nTPM: 24.9
1828 Male, age 53, unknown 25.4
2298 Female, age 72, unknown 25.4
2016 Female, age 72, unknown 24.8
2750 Male, age 76, both hemispheres 24.6
2047 Male, age 72, unknown 24.5
Inferior colliculus
nTPM: 24.1
1848 Female, age 42, unknown 26.0
1890 Male, age 53, unknown 24.3
2097 Female, age 72, unknown 23.4
2849 Male, age 72, unknown 22.7
Median raphe nucleus
nTPM: 22.8
2220 Male, age 76, midline 22.8
Pedunculopontine tegmental nucleus
nTPM: 21.2
1921 Female, age 85, both hemispheres 23.4
2334 Male, age 80, both hemispheres 22.1
2338 Male, age 61, both hemispheres 18.1
Periaquaductal grey, anterior
nTPM: 29.0
2502 Female, age 75, unknown 33.8
1947 Male, age 18, unknown 27.6
1795 Male, age 51, unknown 25.7
Periaquaductal grey, dorsal
nTPM: 25.5
1840 Male, age 53, unknown 27.8
2464 Female, age 72, unknown 25.9
2850 Male, age 76, both hemispheres 24.8
1831 Male, age 72, unknown 23.7
Periaquaductal grey, lateral
nTPM: 23.0
2053 Male, age 18, unknown 25.3
2140 Male, age 76, both hemispheres 25.1
2272 Male, age 74, both hemispheres 18.7
Pretectal area
nTPM: 25.6
2667 Female, age 75, unknown 28.3
1816 Male, age 51, unknown 27.7
2407 Male, age 75, both hemispheres 27.5
2825 Male, age 18, unknown 26.2
1944 Female, age 72, unknown 25.7
2316 Male, age 76, right hemisphere 25.1
2007 Male, age 72, unknown 24.7
2273 Male, age 74, both hemispheres 24.6
1817 Female, age 42, unknown 24.0
2224 Female, age 72, unknown 23.9
1815 Male, age 53, unknown 23.6
Red nucleus
nTPM: 24.5
2584 Male, age 75, left hemisphere 27.3
1821 Female, age 72, unknown 26.3
2588 Male, age 74, left hemisphere 25.6
1954 Female, age 42, unknown 24.8
2503 Female, age 72, unknown 24.8
2227 Male, age 72, unknown 24.6
2725 Female, age 75, unknown 24.3
1904 Male, age 53, unknown 24.1
1865 Male, age 51, unknown 23.7
2785 Male, age 18, unknown 23.5
2769 Male, age 72, unknown 23.4
2823 Male, age 76, right hemisphere 21.9
Substantia nigra
nTPM: 25.7
2241 Male, age 72, unknown 33.0
1916 Female, age 42, unknown 27.6
1851 Male, age 51, unknown 27.4
2583 Male, age 75, right hemisphere 26.4
1889 Female, age 72, unknown 25.0
1941 Male, age 53, unknown 24.6
2409 Female, age 72, unknown 24.2
2665 Male, age 74, both hemispheres 23.3
2699 Male, age 18, unknown 23.3
2590 Female, age 75, unknown 22.8
Superior colliculus
nTPM: 26.3
2664 Male, age 75, both hemispheres 31.6
2261 Male, age 18, unknown 27.2
1895 Male, age 76, right hemisphere 26.7
2087 Female, age 72, unknown 26.5
1796 Male, age 53, unknown 26.3
1839 Male, age 51, unknown 26.2
1913 Female, age 42, unknown 25.5
1995 Male, age 72, unknown 25.5
2587 Male, age 74, left hemisphere 24.5
2668 Female, age 75, unknown 22.7
Ventral tegmental area
nTPM: 25.2
2021 Male, age 53, unknown 27.1
1942 Male, age 51, unknown 27.0
2410 Female, age 72, unknown 26.4
1915 Female, age 42, unknown 25.8
2218 Male, age 76, both hemispheres 22.9
2223 Female, age 72, unknown 22.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.5
Samples: 139

Max nTPM: 52.1
Min nTPM: 21.2
Std nTPM: 5.4
Median nTPM: 34.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 52.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 51.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 51.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 50.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 50.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 49.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 46.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 46.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 45.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 45.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 44.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 167.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 167.8
FF:10158-103A5 76 years, female 167.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.4
Pig sample Sample description nTPM
Midbrain
nTPM: 52.4
Samples: 4

Max nTPM: 66.2
Min nTPM: 40.3
Sample A Female 52.6
Sample B Female 40.3
Sample C Male 66.2
Sample D Male 50.3
Periaqueductal gray
nTPM: 40.8
Samples: 3

Max nTPM: 46.4
Min nTPM: 37.0
Sample B Female 39.1
Sample C Male 46.4
Sample D Male 37.0
Substantia nigra
nTPM: 51.3
Samples: 4

Max nTPM: 57.5
Min nTPM: 44.8
Sample A Female 56.9
Sample B Female 45.9
Sample C Male 57.5
Sample D Male 44.8
Superior colliculi
nTPM: 51.7
Samples: 4

Max nTPM: 54.1
Min nTPM: 49.2
Sample A Female 53.0
Sample B Female 49.2
Sample C Male 54.1
Sample D Male 50.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.5
Samples: 4

Max nTPM: 68.8
Min nTPM: 48.9
Sample A Male 48.9
Sample B Male 64.1
Sample C Female 68.8
Sample D Female 64.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
77800925 Antisense, RP_070219_01_A09, Mouse strain C57BL/6J (56 days, male) 14.3
75042254 Antisense, RP_060412_02_C08, Mouse strain C57BL/6J (56 days, male) 14.2
532744 Antisense, RP_040825_02_A07, Mouse strain C57BL/6J (56 days, male) 7.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.