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RAPGEF4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:75.0 nTPM
HPA:75.0 nTPM
GTEx:28.1 nTPM
FANTOM5:7.3 Scaled Tags Per Million
Pig:20.8 nTPM
Mouse:88.9 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 75.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.3
2828 Female, age 72, unknown 64.2
2019 Male, age 18, unknown 64.0
2219 Male, age 76, both hemispheres 62.0
2411 Female, age 72, unknown 58.7
1870 Female, age 42, unknown 58.1
1827 Male, age 72, unknown 57.3
1833 Male, age 53, unknown 56.5
1830 Male, age 51, unknown 55.6
2666 Male, age 74, left hemisphere 54.9
2586 Male, age 75, left hemisphere 51.9
Dorsal raphe nucleus
nTPM: 52.8
2750 Male, age 76, both hemispheres 55.4
2298 Female, age 72, unknown 52.9
2047 Male, age 72, unknown 52.3
1828 Male, age 53, unknown 51.7
2016 Female, age 72, unknown 51.6
Inferior colliculus
nTPM: 62.4
2097 Female, age 72, unknown 65.5
1848 Female, age 42, unknown 64.3
1890 Male, age 53, unknown 61.2
2849 Male, age 72, unknown 58.6
Median raphe nucleus
nTPM: 56.4
2220 Male, age 76, midline 56.4
Pedunculopontine tegmental nucleus
nTPM: 57.5
1921 Female, age 85, both hemispheres 59.7
2338 Male, age 61, both hemispheres 57.0
2334 Male, age 80, both hemispheres 55.8
Periaquaductal grey, anterior
nTPM: 56.4
1795 Male, age 51, unknown 60.6
2502 Female, age 75, unknown 54.3
1947 Male, age 18, unknown 54.2
Periaquaductal grey, dorsal
nTPM: 57.1
1831 Male, age 72, unknown 60.0
2464 Female, age 72, unknown 58.4
1840 Male, age 53, unknown 56.8
2850 Male, age 76, both hemispheres 53.4
Periaquaductal grey, lateral
nTPM: 53.1
2053 Male, age 18, unknown 55.8
2140 Male, age 76, both hemispheres 53.0
2272 Male, age 74, both hemispheres 50.5
Pretectal area
nTPM: 75.0
2667 Female, age 75, unknown 125.4
1944 Female, age 72, unknown 92.0
1815 Male, age 53, unknown 86.9
1816 Male, age 51, unknown 86.8
2007 Male, age 72, unknown 78.0
1817 Female, age 42, unknown 75.6
2273 Male, age 74, both hemispheres 58.5
2316 Male, age 76, right hemisphere 57.6
2224 Female, age 72, unknown 56.8
2825 Male, age 18, unknown 54.0
2407 Male, age 75, both hemispheres 53.6
Red nucleus
nTPM: 55.4
2785 Male, age 18, unknown 65.5
1954 Female, age 42, unknown 59.0
1821 Female, age 72, unknown 56.9
2823 Male, age 76, right hemisphere 56.7
1904 Male, age 53, unknown 55.6
2227 Male, age 72, unknown 54.5
2503 Female, age 72, unknown 54.3
1865 Male, age 51, unknown 54.0
2584 Male, age 75, left hemisphere 53.9
2769 Male, age 72, unknown 53.9
2588 Male, age 74, left hemisphere 51.3
2725 Female, age 75, unknown 48.8
Substantia nigra
nTPM: 62.4
1889 Female, age 72, unknown 78.4
2665 Male, age 74, both hemispheres 68.6
2409 Female, age 72, unknown 65.5
1916 Female, age 42, unknown 63.4
2241 Male, age 72, unknown 62.9
1941 Male, age 53, unknown 62.4
1851 Male, age 51, unknown 61.6
2583 Male, age 75, right hemisphere 54.6
2699 Male, age 18, unknown 54.5
2590 Female, age 75, unknown 52.4
Superior colliculus
nTPM: 67.3
2087 Female, age 72, unknown 107.0
1913 Female, age 42, unknown 74.7
2668 Female, age 75, unknown 72.0
2261 Male, age 18, unknown 68.9
1895 Male, age 76, right hemisphere 64.6
1796 Male, age 53, unknown 60.4
1995 Male, age 72, unknown 60.0
1839 Male, age 51, unknown 58.1
2587 Male, age 74, left hemisphere 55.2
2664 Male, age 75, both hemispheres 52.3
Ventral tegmental area
nTPM: 60.2
1915 Female, age 42, unknown 65.1
2223 Female, age 72, unknown 64.6
2410 Female, age 72, unknown 60.9
2218 Male, age 76, both hemispheres 58.8
2021 Male, age 53, unknown 56.5
1942 Male, age 51, unknown 55.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.1
Samples: 139

Max nTPM: 119.4
Min nTPM: 5.8
Std nTPM: 17.2
Median nTPM: 24.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 119.4
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 81.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 80.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 79.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 76.1
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 75.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 71.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 61.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 55.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 55.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 54.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.3
FF:10158-103A5 76 years, female 7.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.8
Pig sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 28.7
Min nTPM: 7.0
Sample A Female 7.0
Sample B Female 12.6
Sample C Male 28.7
Sample D Male 26.9
Periaqueductal gray
nTPM: 10.7
Samples: 3

Max nTPM: 11.6
Min nTPM: 9.8
Sample B Female 10.6
Sample C Male 11.6
Sample D Male 9.8
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 14.1
Min nTPM: 11.0
Sample A Female 14.1
Sample B Female 11.0
Sample C Male 13.2
Sample D Male 11.4
Superior colliculi
nTPM: 20.8
Samples: 4

Max nTPM: 22.8
Min nTPM: 15.0
Sample A Female 22.8
Sample B Female 15.0
Sample C Male 22.8
Sample D Male 22.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.9
Samples: 4

Max nTPM: 94.9
Min nTPM: 85.7
Sample A Male 87.0
Sample B Male 94.9
Sample C Female 85.7
Sample D Female 88.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
69817952 Antisense, RP_050510_04_B01, Mouse strain C57BL/6J (56 days, male) 2.9
74749895 Antisense, RP_060220_04_F01, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.