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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.0 nTPM
HPA:31.0 nTPM
GTEx:42.4 nTPM
FANTOM5:55.6 Scaled Tags Per Million
Pig:35.8 nTPM
Mouse:98.7 nTPM
Allen mouse:10.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.1
2411 Female, age 72, unknown 32.0
2019 Male, age 18, unknown 31.5
1870 Female, age 42, unknown 29.7
1827 Male, age 72, unknown 29.3
1833 Male, age 53, unknown 29.0
2219 Male, age 76, both hemispheres 28.6
1830 Male, age 51, unknown 28.2
2828 Female, age 72, unknown 28.2
2586 Male, age 75, left hemisphere 28.0
2666 Male, age 74, left hemisphere 26.4
Dorsal raphe nucleus
nTPM: 30.3
2298 Female, age 72, unknown 32.8
1828 Male, age 53, unknown 30.6
2047 Male, age 72, unknown 30.0
2750 Male, age 76, both hemispheres 29.7
2016 Female, age 72, unknown 28.6
Inferior colliculus
nTPM: 31.0
2097 Female, age 72, unknown 34.1
1848 Female, age 42, unknown 30.7
1890 Male, age 53, unknown 30.7
2849 Male, age 72, unknown 28.6
Median raphe nucleus
nTPM: 27.5
2220 Male, age 76, midline 27.5
Pedunculopontine tegmental nucleus
nTPM: 29.7
1921 Female, age 85, both hemispheres 30.5
2334 Male, age 80, both hemispheres 30.3
2338 Male, age 61, both hemispheres 28.3
Periaquaductal grey, anterior
nTPM: 28.8
1947 Male, age 18, unknown 29.4
1795 Male, age 51, unknown 28.5
2502 Female, age 75, unknown 28.5
Periaquaductal grey, dorsal
nTPM: 28.5
1840 Male, age 53, unknown 30.1
2464 Female, age 72, unknown 29.2
1831 Male, age 72, unknown 27.8
2850 Male, age 76, both hemispheres 27.0
Periaquaductal grey, lateral
nTPM: 28.9
2272 Male, age 74, both hemispheres 32.8
2053 Male, age 18, unknown 27.6
2140 Male, age 76, both hemispheres 26.4
Pretectal area
nTPM: 30.5
2273 Male, age 74, both hemispheres 33.0
2007 Male, age 72, unknown 32.3
1817 Female, age 42, unknown 32.2
1944 Female, age 72, unknown 32.1
1816 Male, age 51, unknown 31.9
2667 Female, age 75, unknown 31.2
2224 Female, age 72, unknown 30.3
1815 Male, age 53, unknown 29.6
2825 Male, age 18, unknown 28.9
2316 Male, age 76, right hemisphere 27.3
2407 Male, age 75, both hemispheres 26.4
Red nucleus
nTPM: 29.8
1821 Female, age 72, unknown 33.7
1954 Female, age 42, unknown 30.9
2503 Female, age 72, unknown 30.7
2785 Male, age 18, unknown 30.6
1865 Male, age 51, unknown 30.3
2227 Male, age 72, unknown 29.7
2769 Male, age 72, unknown 29.7
1904 Male, age 53, unknown 29.4
2823 Male, age 76, right hemisphere 29.0
2588 Male, age 74, left hemisphere 28.6
2725 Female, age 75, unknown 28.2
2584 Male, age 75, left hemisphere 27.0
Substantia nigra
nTPM: 30.7
1916 Female, age 42, unknown 33.8
2241 Male, age 72, unknown 33.2
1889 Female, age 72, unknown 32.6
1941 Male, age 53, unknown 31.7
1851 Male, age 51, unknown 31.6
2590 Female, age 75, unknown 30.4
2409 Female, age 72, unknown 30.1
2699 Male, age 18, unknown 28.9
2583 Male, age 75, right hemisphere 27.9
2665 Male, age 74, both hemispheres 27.2
Superior colliculus
nTPM: 28.8
2087 Female, age 72, unknown 31.3
2587 Male, age 74, left hemisphere 29.9
2668 Female, age 75, unknown 29.9
1895 Male, age 76, right hemisphere 29.7
1796 Male, age 53, unknown 29.0
2261 Male, age 18, unknown 29.0
1839 Male, age 51, unknown 28.5
1913 Female, age 42, unknown 27.8
1995 Male, age 72, unknown 27.8
2664 Male, age 75, both hemispheres 25.2
Ventral tegmental area
nTPM: 30.2
2410 Female, age 72, unknown 33.5
1915 Female, age 42, unknown 31.6
2223 Female, age 72, unknown 29.8
2218 Male, age 76, both hemispheres 29.3
1942 Male, age 51, unknown 28.6
2021 Male, age 53, unknown 28.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.4
Samples: 139

Max nTPM: 75.3
Min nTPM: 22.2
Std nTPM: 9.6
Median nTPM: 40.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 75.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 71.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 68.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 67.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 64.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 63.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 62.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 62.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 59.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 57.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 56.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.6
FF:10158-103A5 76 years, female 55.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.8
Pig sample Sample description nTPM
Midbrain
nTPM: 33.3
Samples: 4

Max nTPM: 40.6
Min nTPM: 27.9
Sample A Female 33.9
Sample B Female 27.9
Sample C Male 40.6
Sample D Male 30.6
Periaqueductal gray
nTPM: 25.0
Samples: 3

Max nTPM: 26.9
Min nTPM: 22.5
Sample B Female 26.9
Sample C Male 25.7
Sample D Male 22.5
Substantia nigra
nTPM: 30.4
Samples: 4

Max nTPM: 36.8
Min nTPM: 25.9
Sample A Female 36.8
Sample B Female 25.9
Sample C Male 31.8
Sample D Male 27.1
Superior colliculi
nTPM: 35.8
Samples: 4

Max nTPM: 42.9
Min nTPM: 29.6
Sample A Female 39.3
Sample B Female 29.6
Sample C Male 42.9
Sample D Male 31.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 98.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 98.8
Samples: 4

Max nTPM: 105.8
Min nTPM: 91.7
Sample A Male 100.1
Sample B Male 91.7
Sample C Female 97.4
Sample D Female 105.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
355890 Antisense, RP_040617_01_F08, Mouse strain C57BL/6J (56 days, male) 10.1
67936414 Antisense, RP_040617_01_F08, Mouse strain C57BL/6J (56 days, male) 5.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.