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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.1 nTPM
HPA:19.1 nTPM
GTEx:29.9 nTPM
FANTOM5:35.5 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:6.4 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.5
2481 Female, age 94, left hemisphere 19.0
1781 Male, age 74, unknown 17.7
1854 Male, age 80, left hemisphere 17.6
2288 Male, age 75, left hemisphere 17.6
2846 Female, age 79, unknown 17.3
2290 Female, age 72, unknown 17.1
1857 Female, age 85, left hemisphere 16.9
2289 Male, age 61, right hemisphere 16.7
Claustrum
nTPM: 17.1
2292 Female, age 85, both hemispheres 18.2
1956 Male, age 74, unknown 17.8
2392 Female, age 94, both hemispheres 17.5
2198 Male, age 80, both hemispheres 17.2
2645 Female, age 72, unknown 17.1
2196 Female, age 79, unknown 17.0
2284 Female, age 91, both hemispheres 16.6
2568 Male, age 61, both hemispheres 16.4
2491 Male, age 75, both hemispheres 16.3
Globus pallidus, externus
nTPM: 18.5
1996 Male, age 80, right hemisphere 19.4
2772 Female, age 79, unknown 19.0
2395 Male, age 75, both hemispheres 18.5
2646 Male, age 61, right hemisphere 18.1
2567 Female, age 72, unknown 17.6
Globus pallidus, internus
nTPM: 19.1
2037 Male, age 80, right hemisphere 19.5
1818 Male, age 74, unknown 19.4
2778 Female, age 91, both hemispheres 19.4
2287 Male, age 75, right hemisphere 19.1
2111 Female, age 85, right hemisphere 18.9
2566 Female, age 72, unknown 18.7
2483 Female, age 94, right hemisphere 18.4
Nucleus accumbens
nTPM: 17.4
2286 Male, age 75, left hemisphere 18.1
2391 Female, age 94, left hemisphere 18.1
2698 Female, age 72, unknown 17.9
1806 Female, age 85, left hemisphere 17.5
2732 Male, age 80, right hemisphere 17.4
2824 Male, age 61, right hemisphere 16.9
1783 Male, age 74, unknown 16.7
1856 Female, age 91, right hemisphere 16.3
Nucleus basalis of Meynert
nTPM: 17.4
2569 Male, age 61, both hemispheres 17.8
2821 Male, age 75, both hemispheres 17.5
2484 Female, age 94, left hemisphere 17.2
2393 Male, age 80, right hemisphere 16.9
Nucleus of the diagonal band
nTPM: 16.8
1812 Female, age 91, both hemispheres 17.1
1979 Male, age 74, unknown 16.9
2775 Male, age 80, right hemisphere 16.8
2195 Female, age 85, both hemispheres 16.6
2029 Male, age 61, right hemisphere 16.4
Olfactory tubercle
nTPM: 16.6
1846 Male, age 80, right hemisphere 17.3
1998 Female, age 91, both hemispheres 16.8
2856 Male, age 75, right hemisphere 16.3
2487 Female, age 94, left hemisphere 16.1
Putamen
nTPM: 17.2
2482 Female, age 94, left hemisphere 18.5
1829 Male, age 74, unknown 17.3
2466 Female, age 79, unknown 17.3
2647 Male, age 75, left hemisphere 17.2
1838 Male, age 80, right hemisphere 16.9
2489 Female, age 72, unknown 16.9
1937 Female, age 91, right hemisphere 16.7
Septal nuclei
nTPM: 16.7
2394 Male, age 61, left hemisphere 17.3
2031 Female, age 72, unknown 17.1
2199 Male, age 80, right hemisphere 17.0
2629 Female, age 94, right hemisphere 16.7
1960 Male, age 74, unknown 16.4
2059 Female, age 85, both hemispheres 16.4
2009 Female, age 91, both hemispheres 16.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.7
Samples: 246

Max nTPM: 48.9
Min nTPM: 14.7
Std nTPM: 5.9
Median nTPM: 25.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 48.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 48.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 47.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 47.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 46.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 45.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 43.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 42.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 41.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 39.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 38.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.9
Samples: 246

Max nTPM: 46.2
Min nTPM: 16.2
Std nTPM: 6.1
Median nTPM: 23.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 46.2
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 45.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 44.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 44.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 44.6
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 43.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 40.0
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 39.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 39.7
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 39.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 39.1
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Brain - Putamen (basal ganglia)
Average nTPM: 29.9
Samples: 205

Max nTPM: 62.0
Min nTPM: 18.0
Std nTPM: 6.7
Median nTPM: 28.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 62.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 52.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 47.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 47.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 46.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 45.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 44.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 44.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 44.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 42.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 42.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.4
FF:10164-103B2 76 years, female 22.4
Globus pallidus
Scaled Tags Per Million: 35.5
FF:10175-103C4 60 years, female 35.5
FF:10161-103A8 76 years, female 35.5
Nucleus accumbens
Scaled Tags Per Million: 29.9
FF:10037-101F1 23-56 years, mixed 29.9
Putamen
Scaled Tags Per Million: 31.8
FF:10176-103C5 60 years, female 31.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.5
Pig sample Sample description nTPM
Caudate
nTPM: 12.2
Samples: 4

Max nTPM: 12.9
Min nTPM: 11.4
Sample A Female 11.4
Sample B Female 12.7
Sample C Male 11.9
Sample D Male 12.9
Putamen
nTPM: 13.0
Samples: 4

Max nTPM: 14.2
Min nTPM: 11.0
Sample A Female 13.2
Sample B Female 11.0
Sample C Male 14.2
Sample D Male 13.5
Septum
nTPM: 13.5
Samples: 4

Max nTPM: 17.4
Min nTPM: 11.7
Sample A Female 13.0
Sample B Female 11.7
Sample C Male 12.0
Sample D Male 17.4
Ventral pallidum
nTPM: 12.6
Samples: 4

Max nTPM: 13.7
Min nTPM: 11.0
Sample A Female 11.0
Sample B Female 13.6
Sample C Male 13.7
Sample D Male 12.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.4
Samples: 4

Max nTPM: 6.5
Min nTPM: 6.3
Sample A Male 6.3
Sample B Male 6.5
Sample C Female 6.4
Sample D Female 6.3
Septum
nTPM: 6.1
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.6
Sample A Male 6.3
Sample B Male 6.0
Sample C Female 5.6
Sample D Female 6.4
Ventral forebrain
nTPM: 6.3
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.4
Sample A Male 5.5
Sample B Male 5.8
Sample C Female 8.3
Sample D Female 5.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
77620425 Antisense, RP_070205_01_H06, Mouse strain C57BL/6J (56 days, male) 0.4
71991804 Antisense, RP_051012_03_E05, Mouse strain C57BL/6J (56 days, male) 0.2
77414587 Antisense, RP_070205_01_H06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.2
77620425 Antisense, RP_070205_01_H06, Mouse strain C57BL/6J (56 days, male) 0.4
77414587 Antisense, RP_070205_01_H06, Mouse strain C57BL/6J (56 days, male) 0.1
71991804 Antisense, RP_051012_03_E05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.