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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.7 nTPM
HPA:32.7 nTPM
GTEx:39.8 nTPM
FANTOM5:53.3 Scaled Tags Per Million
Pig:10.1 nTPM
Mouse:18.6 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.4
2219 Male, age 76, both hemispheres 32.8
1870 Female, age 42, unknown 31.9
1830 Male, age 51, unknown 30.9
2411 Female, age 72, unknown 30.5
2586 Male, age 75, left hemisphere 29.8
2828 Female, age 72, unknown 29.6
1833 Male, age 53, unknown 29.5
1827 Male, age 72, unknown 29.0
2666 Male, age 74, left hemisphere 25.8
2019 Male, age 18, unknown 24.4
Dorsal raphe nucleus
nTPM: 30.2
2047 Male, age 72, unknown 31.3
1828 Male, age 53, unknown 31.0
2750 Male, age 76, both hemispheres 30.8
2016 Female, age 72, unknown 29.8
2298 Female, age 72, unknown 27.8
Inferior colliculus
nTPM: 28.1
1890 Male, age 53, unknown 28.9
2097 Female, age 72, unknown 28.8
1848 Female, age 42, unknown 27.8
2849 Male, age 72, unknown 27.1
Median raphe nucleus
nTPM: 32.7
2220 Male, age 76, midline 32.7
Pedunculopontine tegmental nucleus
nTPM: 29.9
1921 Female, age 85, both hemispheres 31.0
2334 Male, age 80, both hemispheres 29.8
2338 Male, age 61, both hemispheres 28.8
Periaquaductal grey, anterior
nTPM: 28.7
1947 Male, age 18, unknown 30.0
2502 Female, age 75, unknown 29.0
1795 Male, age 51, unknown 27.2
Periaquaductal grey, dorsal
nTPM: 29.1
2850 Male, age 76, both hemispheres 31.4
1840 Male, age 53, unknown 29.4
1831 Male, age 72, unknown 28.0
2464 Female, age 72, unknown 27.4
Periaquaductal grey, lateral
nTPM: 28.8
2053 Male, age 18, unknown 29.9
2140 Male, age 76, both hemispheres 29.2
2272 Male, age 74, both hemispheres 27.4
Pretectal area
nTPM: 28.2
2316 Male, age 76, right hemisphere 31.3
2825 Male, age 18, unknown 31.0
2667 Female, age 75, unknown 29.9
2407 Male, age 75, both hemispheres 29.7
2224 Female, age 72, unknown 29.0
1815 Male, age 53, unknown 28.2
2273 Male, age 74, both hemispheres 27.1
1944 Female, age 72, unknown 26.6
1816 Male, age 51, unknown 26.4
1817 Female, age 42, unknown 25.8
2007 Male, age 72, unknown 25.7
Red nucleus
nTPM: 29.8
1904 Male, age 53, unknown 32.1
1821 Female, age 72, unknown 31.8
2823 Male, age 76, right hemisphere 31.5
2588 Male, age 74, left hemisphere 30.8
2769 Male, age 72, unknown 30.2
1865 Male, age 51, unknown 29.8
2503 Female, age 72, unknown 29.7
1954 Female, age 42, unknown 29.4
2227 Male, age 72, unknown 29.3
2725 Female, age 75, unknown 28.5
2584 Male, age 75, left hemisphere 27.9
2785 Male, age 18, unknown 26.2
Substantia nigra
nTPM: 32.3
2241 Male, age 72, unknown 39.0
2699 Male, age 18, unknown 38.0
1916 Female, age 42, unknown 36.3
1851 Male, age 51, unknown 34.7
2665 Male, age 74, both hemispheres 30.8
2590 Female, age 75, unknown 29.7
1941 Male, age 53, unknown 29.0
2583 Male, age 75, right hemisphere 28.9
2409 Female, age 72, unknown 28.5
1889 Female, age 72, unknown 28.0
Superior colliculus
nTPM: 28.4
1895 Male, age 76, right hemisphere 31.0
2668 Female, age 75, unknown 29.3
2261 Male, age 18, unknown 28.4
2587 Male, age 74, left hemisphere 28.4
1796 Male, age 53, unknown 28.0
1839 Male, age 51, unknown 28.0
1913 Female, age 42, unknown 28.0
2664 Male, age 75, both hemispheres 27.9
1995 Male, age 72, unknown 27.5
2087 Female, age 72, unknown 27.5
Ventral tegmental area
nTPM: 32.0
1915 Female, age 42, unknown 34.7
2218 Male, age 76, both hemispheres 33.4
2410 Female, age 72, unknown 32.2
1942 Male, age 51, unknown 32.0
2021 Male, age 53, unknown 30.0
2223 Female, age 72, unknown 29.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.8
Samples: 139

Max nTPM: 79.1
Min nTPM: 18.4
Std nTPM: 10.2
Median nTPM: 38.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 79.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 71.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 66.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 64.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 62.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 62.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 60.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 58.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 54.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 54.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 54.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.3
FF:10158-103A5 76 years, female 53.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.1
Pig sample Sample description nTPM
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 10.8
Min nTPM: 9.1
Sample A Female 10.3
Sample B Female 9.1
Sample C Male 9.9
Sample D Male 10.8
Periaqueductal gray
nTPM: 8.2
Samples: 3

Max nTPM: 8.7
Min nTPM: 7.6
Sample B Female 8.3
Sample C Male 8.7
Sample D Male 7.6
Substantia nigra
nTPM: 9.8
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.1
Sample A Female 9.8
Sample B Female 9.2
Sample C Male 11.1
Sample D Male 9.1
Superior colliculi
nTPM: 10.1
Samples: 4

Max nTPM: 10.7
Min nTPM: 9.7
Sample A Female 10.7
Sample B Female 10.4
Sample C Male 9.7
Sample D Male 9.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.6
Samples: 4

Max nTPM: 19.0
Min nTPM: 17.8
Sample A Male 18.7
Sample B Male 17.8
Sample C Female 19.0
Sample D Female 18.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
74819462 Antisense, RP_060315_02_F04, Mouse strain C57BL/6J (56 days, male) 1.5
69838113 Antisense, RP_050224_02_C12, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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