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ARCN1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.3 nTPM
HPA:51.3 nTPM
GTEx:52.6 nTPM
FANTOM5:110.9 Scaled Tags Per Million
Pig:58.4 nTPM
Mouse:76.3 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.3
1870 Female, age 42, unknown 49.8
2019 Male, age 18, unknown 48.8
2411 Female, age 72, unknown 48.5
1830 Male, age 51, unknown 48.3
1833 Male, age 53, unknown 48.3
1827 Male, age 72, unknown 47.2
2666 Male, age 74, left hemisphere 46.7
2219 Male, age 76, both hemispheres 46.1
2828 Female, age 72, unknown 45.9
2586 Male, age 75, left hemisphere 43.2
Dorsal raphe nucleus
nTPM: 46.1
2750 Male, age 76, both hemispheres 49.2
2298 Female, age 72, unknown 46.3
2047 Male, age 72, unknown 45.7
1828 Male, age 53, unknown 45.6
2016 Female, age 72, unknown 43.9
Inferior colliculus
nTPM: 47.3
2097 Female, age 72, unknown 47.9
1848 Female, age 42, unknown 47.4
1890 Male, age 53, unknown 47.0
2849 Male, age 72, unknown 46.9
Median raphe nucleus
nTPM: 51.3
2220 Male, age 76, midline 51.3
Pedunculopontine tegmental nucleus
nTPM: 49.4
2334 Male, age 80, both hemispheres 50.4
2338 Male, age 61, both hemispheres 50.4
1921 Female, age 85, both hemispheres 47.5
Periaquaductal grey, anterior
nTPM: 46.0
2502 Female, age 75, unknown 47.4
1947 Male, age 18, unknown 46.9
1795 Male, age 51, unknown 43.6
Periaquaductal grey, dorsal
nTPM: 45.5
2850 Male, age 76, both hemispheres 47.5
2464 Female, age 72, unknown 45.4
1831 Male, age 72, unknown 44.9
1840 Male, age 53, unknown 44.3
Periaquaductal grey, lateral
nTPM: 45.1
2272 Male, age 74, both hemispheres 46.2
2053 Male, age 18, unknown 44.9
2140 Male, age 76, both hemispheres 44.2
Pretectal area
nTPM: 47.7
1817 Female, age 42, unknown 51.8
1815 Male, age 53, unknown 50.6
1816 Male, age 51, unknown 50.2
2007 Male, age 72, unknown 49.9
1944 Female, age 72, unknown 49.6
2224 Female, age 72, unknown 46.4
2667 Female, age 75, unknown 46.0
2316 Male, age 76, right hemisphere 45.8
2825 Male, age 18, unknown 45.2
2273 Male, age 74, both hemispheres 45.1
2407 Male, age 75, both hemispheres 44.4
Red nucleus
nTPM: 48.1
1821 Female, age 72, unknown 52.1
1865 Male, age 51, unknown 50.1
1954 Female, age 42, unknown 48.9
2725 Female, age 75, unknown 48.5
2785 Male, age 18, unknown 48.5
1904 Male, age 53, unknown 48.3
2588 Male, age 74, left hemisphere 47.7
2503 Female, age 72, unknown 47.4
2823 Male, age 76, right hemisphere 46.8
2769 Male, age 72, unknown 46.4
2227 Male, age 72, unknown 46.2
2584 Male, age 75, left hemisphere 45.8
Substantia nigra
nTPM: 48.6
2241 Male, age 72, unknown 50.9
1889 Female, age 72, unknown 50.6
1941 Male, age 53, unknown 49.7
1916 Female, age 42, unknown 49.4
1851 Male, age 51, unknown 48.7
2409 Female, age 72, unknown 48.4
2590 Female, age 75, unknown 48.2
2699 Male, age 18, unknown 47.8
2665 Male, age 74, both hemispheres 47.1
2583 Male, age 75, right hemisphere 45.3
Superior colliculus
nTPM: 46.6
2587 Male, age 74, left hemisphere 48.8
1913 Female, age 42, unknown 48.4
1895 Male, age 76, right hemisphere 48.1
2087 Female, age 72, unknown 47.4
1995 Male, age 72, unknown 47.1
2261 Male, age 18, unknown 46.9
1839 Male, age 51, unknown 46.7
2668 Female, age 75, unknown 46.6
1796 Male, age 53, unknown 44.9
2664 Male, age 75, both hemispheres 41.4
Ventral tegmental area
nTPM: 47.6
2410 Female, age 72, unknown 50.0
2218 Male, age 76, both hemispheres 48.6
2223 Female, age 72, unknown 48.3
1915 Female, age 42, unknown 48.1
2021 Male, age 53, unknown 46.1
1942 Male, age 51, unknown 44.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.6
Samples: 139

Max nTPM: 72.8
Min nTPM: 38.8
Std nTPM: 7.3
Median nTPM: 51.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 72.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 70.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 69.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 68.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 68.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 67.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 66.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 66.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 64.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 64.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 64.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.9
FF:10158-103A5 76 years, female 110.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.4
Pig sample Sample description nTPM
Midbrain
nTPM: 54.8
Samples: 4

Max nTPM: 64.3
Min nTPM: 49.3
Sample A Female 64.3
Sample B Female 49.3
Sample C Male 55.1
Sample D Male 50.5
Periaqueductal gray
nTPM: 43.5
Samples: 3

Max nTPM: 44.9
Min nTPM: 41.8
Sample B Female 43.7
Sample C Male 44.9
Sample D Male 41.8
Substantia nigra
nTPM: 50.1
Samples: 4

Max nTPM: 60.1
Min nTPM: 40.9
Sample A Female 60.1
Sample B Female 52.6
Sample C Male 46.9
Sample D Male 40.9
Superior colliculi
nTPM: 58.5
Samples: 4

Max nTPM: 60.3
Min nTPM: 56.4
Sample A Female 60.3
Sample B Female 58.7
Sample C Male 58.4
Sample D Male 56.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 76.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.3
Samples: 4

Max nTPM: 79.6
Min nTPM: 70.9
Sample A Male 70.9
Sample B Male 79.5
Sample C Female 79.6
Sample D Female 75.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
583567 Antisense, RP_040831_02_C09, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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