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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:161.5 nTPM
HPA:161.5 nTPM
GTEx:49.5 nTPM
FANTOM5:204.2 Scaled Tags Per Million
Pig:46.3 nTPM
Mouse:66.1 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 161.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.6
2828 Female, age 72, unknown 122.6
2586 Male, age 75, left hemisphere 110.5
2666 Male, age 74, left hemisphere 93.3
1827 Male, age 72, unknown 87.2
1870 Female, age 42, unknown 80.3
1833 Male, age 53, unknown 70.9
1830 Male, age 51, unknown 70.4
2219 Male, age 76, both hemispheres 66.6
2019 Male, age 18, unknown 60.7
2411 Female, age 72, unknown 53.0
Dorsal raphe nucleus
nTPM: 102.9
2016 Female, age 72, unknown 154.7
1828 Male, age 53, unknown 111.9
2047 Male, age 72, unknown 101.3
2298 Female, age 72, unknown 86.1
2750 Male, age 76, both hemispheres 60.8
Inferior colliculus
nTPM: 84.7
2849 Male, age 72, unknown 95.9
1890 Male, age 53, unknown 91.2
1848 Female, age 42, unknown 89.6
2097 Female, age 72, unknown 62.1
Median raphe nucleus
nTPM: 75.4
2220 Male, age 76, midline 75.4
Pedunculopontine tegmental nucleus
nTPM: 70.9
2338 Male, age 61, both hemispheres 82.6
2334 Male, age 80, both hemispheres 70.0
1921 Female, age 85, both hemispheres 60.2
Periaquaductal grey, anterior
nTPM: 101.9
1795 Male, age 51, unknown 133.2
1947 Male, age 18, unknown 90.4
2502 Female, age 75, unknown 82.0
Periaquaductal grey, dorsal
nTPM: 128.7
2850 Male, age 76, both hemispheres 162.9
1831 Male, age 72, unknown 154.1
1840 Male, age 53, unknown 113.4
2464 Female, age 72, unknown 84.5
Periaquaductal grey, lateral
nTPM: 161.5
2053 Male, age 18, unknown 164.8
2140 Male, age 76, both hemispheres 161.4
2272 Male, age 74, both hemispheres 158.3
Pretectal area
nTPM: 110.4
2273 Male, age 74, both hemispheres 205.0
2407 Male, age 75, both hemispheres 157.5
2825 Male, age 18, unknown 115.5
2224 Female, age 72, unknown 109.8
2316 Male, age 76, right hemisphere 107.5
2667 Female, age 75, unknown 105.2
1944 Female, age 72, unknown 98.4
1815 Male, age 53, unknown 93.2
1816 Male, age 51, unknown 91.4
1817 Female, age 42, unknown 76.1
2007 Male, age 72, unknown 55.0
Red nucleus
nTPM: 68.9
2725 Female, age 75, unknown 98.8
2823 Male, age 76, right hemisphere 80.2
1865 Male, age 51, unknown 71.8
2584 Male, age 75, left hemisphere 68.2
1954 Female, age 42, unknown 67.8
2227 Male, age 72, unknown 67.3
2503 Female, age 72, unknown 64.1
1904 Male, age 53, unknown 63.4
2769 Male, age 72, unknown 63.3
1821 Female, age 72, unknown 62.4
2588 Male, age 74, left hemisphere 59.9
2785 Male, age 18, unknown 59.6
Substantia nigra
nTPM: 89.7
2699 Male, age 18, unknown 139.3
2590 Female, age 75, unknown 105.2
2583 Male, age 75, right hemisphere 101.4
1851 Male, age 51, unknown 87.4
1941 Male, age 53, unknown 81.8
2665 Male, age 74, both hemispheres 81.7
1916 Female, age 42, unknown 78.9
2409 Female, age 72, unknown 77.5
2241 Male, age 72, unknown 72.8
1889 Female, age 72, unknown 70.6
Superior colliculus
nTPM: 112.2
1995 Male, age 72, unknown 166.6
1913 Female, age 42, unknown 143.4
2664 Male, age 75, both hemispheres 143.4
2587 Male, age 74, left hemisphere 115.9
2087 Female, age 72, unknown 109.5
1796 Male, age 53, unknown 104.8
2261 Male, age 18, unknown 99.2
1839 Male, age 51, unknown 92.8
2668 Female, age 75, unknown 75.8
1895 Male, age 76, right hemisphere 70.0
Ventral tegmental area
nTPM: 96.8
2021 Male, age 53, unknown 125.9
1915 Female, age 42, unknown 102.7
1942 Male, age 51, unknown 102.1
2223 Female, age 72, unknown 96.0
2218 Male, age 76, both hemispheres 88.1
2410 Female, age 72, unknown 66.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.5
Samples: 139

Max nTPM: 106.1
Min nTPM: 12.8
Std nTPM: 22.1
Median nTPM: 47.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 106.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 103.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 102.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 101.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 100.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 97.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 93.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 91.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 90.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 90.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 87.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 204.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 204.2
FF:10158-103A5 76 years, female 204.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.3
Pig sample Sample description nTPM
Midbrain
nTPM: 46.3
Samples: 4

Max nTPM: 89.6
Min nTPM: 21.9
Sample A Female 89.6
Sample B Female 21.9
Sample C Male 47.0
Sample D Male 26.8
Periaqueductal gray
nTPM: 38.2
Samples: 3

Max nTPM: 43.9
Min nTPM: 31.0
Sample B Female 31.0
Sample C Male 43.9
Sample D Male 39.6
Substantia nigra
nTPM: 41.7
Samples: 4

Max nTPM: 54.0
Min nTPM: 35.8
Sample A Female 35.8
Sample B Female 54.0
Sample C Male 37.3
Sample D Male 39.8
Superior colliculi
nTPM: 43.7
Samples: 4

Max nTPM: 61.2
Min nTPM: 34.8
Sample A Female 34.8
Sample B Female 61.2
Sample C Male 39.6
Sample D Male 39.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 66.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.1
Samples: 4

Max nTPM: 77.2
Min nTPM: 57.0
Sample A Male 57.0
Sample B Male 60.6
Sample C Female 77.2
Sample D Female 69.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69169391 Antisense, RP_050321_03_E01, Mouse strain C57BL/6J (56 days, male) 2.6
74425572 Antisense, RP_051214_02_H12, Mouse strain C57BL/6J (56 days, male) 0.4
71213156 Antisense, RP_050816_03_H12, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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