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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:75.1 nTPM
HPA:75.1 nTPM
GTEx:89.1 nTPM
FANTOM5:51.6 Scaled Tags Per Million
Pig:59.6 nTPM
Mouse:350.6 nTPM
Allen mouse:13.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA025735Antibody HPA025762
Glial cells MediumLow
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 75.1
Sample id Sample description nTPM
Hippocampus
nTPM: 54.9
1898 Male, age 80, left hemisphere 75.7
2621 Female, age 67, right hemisphere 61.9
2148 Female, age 91, left hemisphere 57.1
1855 Male, age 76, left hemisphere 55.5
1911 Female, age 85, right hemisphere 41.0
2529 Female, age 94, left hemisphere 38.1
Dentate gyrus
nTPM: 63.4
1927 Female, age 91, both hemispheres 85.1
2530 Female, age 94, left hemisphere 74.2
2010 Male, age 76, both hemispheres 63.2
2528 Male, age 74, both hemispheres 54.5
2246 Female, age 85, both hemispheres 53.3
2531 Female, age 67, both hemispheres 50.3
Entorhinal gyrus
nTPM: 53.5
2764 Male, age 80, right hemisphere 71.1
2613 Female, age 94, left hemisphere 61.8
1938 Female, age 85, left hemisphere 56.3
1787 Male, age 76, left hemisphere 51.1
2686 Male, age 75, right hemisphere 42.7
2117 Female, age 91, right hemisphere 38.1
Hippocampus, CA1
nTPM: 66.8
2749 Male, age 80, left hemisphere 107.4
1873 Female, age 85, both hemispheres 64.4
2527 Male, age 74, both hemispheres 60.1
2082 Female, age 91, right hemisphere 53.8
2045 Male, age 76, both hemispheres 48.4
Hippocampus, CA2
nTPM: 60.3
1963 Male, age 80, left hemisphere 79.7
1892 Male, age 76, both hemispheres 68.2
2437 Female, age 94, left hemisphere 59.9
2249 Male, age 74, both hemispheres 55.7
1940 Female, age 85, left hemisphere 50.1
2113 Female, age 91, right hemisphere 48.5
Hippocampus, CA3
nTPM: 57.6
2137 Male, age 80, left hemisphere 68.6
2861 Female, age 67, both hemispheres 66.8
2620 Female, age 94, left hemisphere 64.2
1867 Male, age 76, both hemispheres 53.0
2436 Male, age 74, both hemispheres 52.3
1891 Female, age 85, both hemispheres 40.5
Parahippocampal cortex
nTPM: 58.6
2245 Female, age 91, both hemispheres 73.8
1850 Male, age 80, both hemispheres 67.4
1990 Female, age 91, right hemisphere 65.0
1933 Female, age 85, both hemispheres 64.3
2622 Female, age 67, right hemisphere 62.2
2250 Female, age 67, right hemisphere 58.0
2693 Female, age 94, both hemispheres 57.2
2532 Female, age 72, left hemisphere 54.6
2018 Male, age 76, both hemispheres 45.7
2692 Male, age 74, both hemispheres 37.2
Perirhinal gyrus
nTPM: 75.1
1847 Female, age 91, left hemisphere 100.9
1794 Male, age 80, right hemisphere 80.2
2521 Female, age 94, right hemisphere 77.2
1841 Female, age 85, right hemisphere 64.9
2848 Male, age 76, right hemisphere 52.2
Subiculum
nTPM: 45.7
1977 Female, age 85, both hemispheres 56.8
1901 Male, age 80, both hemispheres 52.9
2438 Female, age 94, left hemisphere 44.9
2619 Male, age 74, both hemispheres 44.4
2729 Female, age 91, right hemisphere 39.5
2042 Male, age 76, both hemispheres 35.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 89.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 89.1
Samples: 197

Max nTPM: 286.4
Min nTPM: 14.9
Std nTPM: 56.8
Median nTPM: 73.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 286.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 273.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 260.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 256.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 248.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 223.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 221.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 212.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 211.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 194.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 182.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.6
FF:10169-103B7 60 years, female 72.1
FF:10153-102I9 76 years, female 31.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 59.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 57.8
Samples: 4

Max nTPM: 77.5
Min nTPM: 41.9
Sample A Female 77.5
Sample B Female 63.7
Sample C Male 48.2
Sample D Male 41.9
Entorhinal cortex
nTPM: 53.0
Samples: 4

Max nTPM: 59.8
Min nTPM: 48.1
Sample A Female 59.8
Sample B Female 53.5
Sample C Male 50.7
Sample D Male 48.1
Subiculum
nTPM: 48.9
Samples: 4

Max nTPM: 61.3
Min nTPM: 43.1
Sample A Female 61.3
Sample B Female 43.1
Sample C Male 45.3
Sample D Male 46.0
Ventral hippocampus
nTPM: 59.6
Samples: 4

Max nTPM: 76.4
Min nTPM: 36.6
Sample A Female 69.3
Sample B Female 36.6
Sample C Male 76.4
Sample D Male 56.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 350.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 324.4
Samples: 4

Max nTPM: 378.0
Min nTPM: 282.7
Sample A Male 282.7
Sample B Male 295.9
Sample C Female 340.8
Sample D Female 378.0
Hippocampal formation
nTPM: 350.6
Samples: 4

Max nTPM: 365.4
Min nTPM: 323.0
Sample A Male 358.1
Sample B Male 323.0
Sample C Female 355.9
Sample D Female 365.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.5
146 Antisense, RP_040315_01_11, Mouse strain C57BL/6J (56 days, male) 13.5
145 Antisense, RP_040315_01_11, Mouse strain C57BL/6J (56 days, male) 13.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.