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ABLIM1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.1 nTPM
HPA:65.1 nTPM
GTEx:36.0 nTPM
FANTOM5:83.9 Scaled Tags Per Million
Pig:92.4 nTPM
Mouse:37.0 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.4
2219 Male, age 76, both hemispheres 97.1
2586 Male, age 75, left hemisphere 71.7
2828 Female, age 72, unknown 66.2
2666 Male, age 74, left hemisphere 53.0
1827 Male, age 72, unknown 51.8
2019 Male, age 18, unknown 51.3
1870 Female, age 42, unknown 45.7
1830 Male, age 51, unknown 44.6
1833 Male, age 53, unknown 41.6
2411 Female, age 72, unknown 41.3
Dorsal raphe nucleus
nTPM: 52.8
2047 Male, age 72, unknown 60.4
2016 Female, age 72, unknown 60.3
1828 Male, age 53, unknown 58.4
2298 Female, age 72, unknown 49.1
2750 Male, age 76, both hemispheres 35.7
Inferior colliculus
nTPM: 51.0
1848 Female, age 42, unknown 55.7
1890 Male, age 53, unknown 55.3
2849 Male, age 72, unknown 49.0
2097 Female, age 72, unknown 43.9
Median raphe nucleus
nTPM: 51.7
2220 Male, age 76, midline 51.7
Pedunculopontine tegmental nucleus
nTPM: 52.9
1921 Female, age 85, both hemispheres 63.4
2338 Male, age 61, both hemispheres 49.9
2334 Male, age 80, both hemispheres 45.3
Periaquaductal grey, anterior
nTPM: 65.1
1947 Male, age 18, unknown 82.8
1795 Male, age 51, unknown 68.9
2502 Female, age 75, unknown 43.7
Periaquaductal grey, dorsal
nTPM: 56.4
2850 Male, age 76, both hemispheres 80.8
1840 Male, age 53, unknown 53.0
2464 Female, age 72, unknown 46.6
1831 Male, age 72, unknown 45.1
Periaquaductal grey, lateral
nTPM: 58.7
2140 Male, age 76, both hemispheres 76.1
2053 Male, age 18, unknown 53.5
2272 Male, age 74, both hemispheres 46.5
Pretectal area
nTPM: 50.8
1817 Female, age 42, unknown 61.2
2667 Female, age 75, unknown 57.9
1816 Male, age 51, unknown 53.5
1944 Female, age 72, unknown 53.2
2273 Male, age 74, both hemispheres 51.1
2407 Male, age 75, both hemispheres 50.8
2825 Male, age 18, unknown 50.0
2007 Male, age 72, unknown 49.0
2224 Female, age 72, unknown 47.0
2316 Male, age 76, right hemisphere 44.3
1815 Male, age 53, unknown 40.9
Red nucleus
nTPM: 43.4
2725 Female, age 75, unknown 53.9
1821 Female, age 72, unknown 47.9
1954 Female, age 42, unknown 47.7
2503 Female, age 72, unknown 47.7
2584 Male, age 75, left hemisphere 44.9
2227 Male, age 72, unknown 43.5
1865 Male, age 51, unknown 43.2
2769 Male, age 72, unknown 41.0
2588 Male, age 74, left hemisphere 40.9
2785 Male, age 18, unknown 39.1
1904 Male, age 53, unknown 38.2
2823 Male, age 76, right hemisphere 32.6
Substantia nigra
nTPM: 56.3
1941 Male, age 53, unknown 70.7
1916 Female, age 42, unknown 60.3
1851 Male, age 51, unknown 58.9
2241 Male, age 72, unknown 57.9
2583 Male, age 75, right hemisphere 55.8
2590 Female, age 75, unknown 54.9
2699 Male, age 18, unknown 53.8
2665 Male, age 74, both hemispheres 52.8
2409 Female, age 72, unknown 50.1
1889 Female, age 72, unknown 48.3
Superior colliculus
nTPM: 49.4
1995 Male, age 72, unknown 58.4
1796 Male, age 53, unknown 56.8
2664 Male, age 75, both hemispheres 54.5
2087 Female, age 72, unknown 51.7
2668 Female, age 75, unknown 50.9
1839 Male, age 51, unknown 49.4
2261 Male, age 18, unknown 49.1
1913 Female, age 42, unknown 46.3
2587 Male, age 74, left hemisphere 45.0
1895 Male, age 76, right hemisphere 32.0
Ventral tegmental area
nTPM: 54.3
1915 Female, age 42, unknown 56.5
2021 Male, age 53, unknown 56.4
1942 Male, age 51, unknown 54.3
2223 Female, age 72, unknown 53.5
2218 Male, age 76, both hemispheres 53.3
2410 Female, age 72, unknown 51.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.0
Samples: 139

Max nTPM: 61.9
Min nTPM: 13.1
Std nTPM: 9.3
Median nTPM: 34.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 61.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 58.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 56.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 56.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 56.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 54.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 54.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 54.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 53.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 52.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 52.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.9
FF:10158-103A5 76 years, female 83.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 92.4
Pig sample Sample description nTPM
Midbrain
nTPM: 92.4
Samples: 4

Max nTPM: 109.5
Min nTPM: 83.2
Sample A Female 109.5
Sample B Female 85.6
Sample C Male 83.2
Sample D Male 91.2
Periaqueductal gray
nTPM: 88.8
Samples: 3

Max nTPM: 92.1
Min nTPM: 85.5
Sample B Female 88.7
Sample C Male 92.1
Sample D Male 85.5
Substantia nigra
nTPM: 92.2
Samples: 4

Max nTPM: 99.6
Min nTPM: 87.2
Sample A Female 87.2
Sample B Female 90.1
Sample C Male 91.9
Sample D Male 99.6
Superior colliculi
nTPM: 90.0
Samples: 4

Max nTPM: 98.6
Min nTPM: 75.5
Sample A Female 95.7
Sample B Female 98.6
Sample C Male 75.5
Sample D Male 90.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.0
Samples: 4

Max nTPM: 38.5
Min nTPM: 35.7
Sample A Male 35.7
Sample B Male 36.9
Sample C Female 38.5
Sample D Female 36.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
77620820 Antisense, RP_070129_04_A01, Mouse strain C57BL/6J (56 days, male) 4.2
74300801 Antisense, RP_051219_03_G10, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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