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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:39.2 nTPM
HPA:39.2 nTPM
GTEx:45.3 nTPM
FANTOM5:42.2 Scaled Tags Per Million
Pig:14.3 nTPM
Mouse:7.3 nTPM
Allen mouse:5.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042043Antibody CAB037190
Glial cells LowNot detected
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.2
Sample id Sample description nTPM
Hippocampus
nTPM: 35.5
2529 Female, age 94, left hemisphere 40.2
2148 Female, age 91, left hemisphere 37.3
2621 Female, age 67, right hemisphere 36.3
1855 Male, age 76, left hemisphere 35.0
1911 Female, age 85, right hemisphere 34.3
1898 Male, age 80, left hemisphere 30.1
Dentate gyrus
nTPM: 36.8
2530 Female, age 94, left hemisphere 42.9
2010 Male, age 76, both hemispheres 39.0
2531 Female, age 67, both hemispheres 36.6
2246 Female, age 85, both hemispheres 35.6
2528 Male, age 74, both hemispheres 34.2
1927 Female, age 91, both hemispheres 32.7
Entorhinal gyrus
nTPM: 35.6
2117 Female, age 91, right hemisphere 41.3
2764 Male, age 80, right hemisphere 38.2
2686 Male, age 75, right hemisphere 37.0
2613 Female, age 94, left hemisphere 34.3
1787 Male, age 76, left hemisphere 33.8
1938 Female, age 85, left hemisphere 29.3
Hippocampus, CA1
nTPM: 33.0
2082 Female, age 91, right hemisphere 37.2
2045 Male, age 76, both hemispheres 35.3
1873 Female, age 85, both hemispheres 32.6
2527 Male, age 74, both hemispheres 32.0
2749 Male, age 80, left hemisphere 27.8
Hippocampus, CA2
nTPM: 35.6
1940 Female, age 85, left hemisphere 39.4
2437 Female, age 94, left hemisphere 39.0
2113 Female, age 91, right hemisphere 36.0
1963 Male, age 80, left hemisphere 34.8
1892 Male, age 76, both hemispheres 32.4
2249 Male, age 74, both hemispheres 32.3
Hippocampus, CA3
nTPM: 34.4
1867 Male, age 76, both hemispheres 40.2
1891 Female, age 85, both hemispheres 38.4
2620 Female, age 94, left hemisphere 34.5
2861 Female, age 67, both hemispheres 33.6
2137 Male, age 80, left hemisphere 31.1
2436 Male, age 74, both hemispheres 28.9
Parahippocampal cortex
nTPM: 34.0
2018 Male, age 76, both hemispheres 39.2
2532 Female, age 72, left hemisphere 37.9
2692 Male, age 74, both hemispheres 36.6
2622 Female, age 67, right hemisphere 35.3
2693 Female, age 94, both hemispheres 34.4
1990 Female, age 91, right hemisphere 33.1
2245 Female, age 91, both hemispheres 31.9
1850 Male, age 80, both hemispheres 30.9
2250 Female, age 67, right hemisphere 30.8
1933 Female, age 85, both hemispheres 29.9
Perirhinal gyrus
nTPM: 30.4
2521 Female, age 94, right hemisphere 33.8
2848 Male, age 76, right hemisphere 33.1
1794 Male, age 80, right hemisphere 29.9
1841 Female, age 85, right hemisphere 28.6
1847 Female, age 91, left hemisphere 26.4
Subiculum
nTPM: 39.2
2042 Male, age 76, both hemispheres 47.8
2729 Female, age 91, right hemisphere 40.1
1901 Male, age 80, both hemispheres 39.9
2438 Female, age 94, left hemisphere 37.6
2619 Male, age 74, both hemispheres 36.0
1977 Female, age 85, both hemispheres 33.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 45.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.3
Samples: 197

Max nTPM: 161.8
Min nTPM: 9.1
Std nTPM: 21.7
Median nTPM: 40.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 161.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 122.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 118.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 113.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 107.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 94.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 90.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 90.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 89.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 86.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 83.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 42.2
FF:10153-102I9 76 years, female 51.9
FF:10169-103B7 60 years, female 32.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 14.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 14.3
Samples: 4

Max nTPM: 17.4
Min nTPM: 10.4
Sample A Female 17.4
Sample B Female 12.5
Sample C Male 16.7
Sample D Male 10.4
Entorhinal cortex
nTPM: 14.3
Samples: 4

Max nTPM: 15.6
Min nTPM: 12.6
Sample A Female 14.7
Sample B Female 14.4
Sample C Male 12.6
Sample D Male 15.6
Subiculum
nTPM: 11.0
Samples: 4

Max nTPM: 13.0
Min nTPM: 9.8
Sample A Female 13.0
Sample B Female 11.3
Sample C Male 10.0
Sample D Male 9.8
Ventral hippocampus
nTPM: 12.9
Samples: 4

Max nTPM: 15.0
Min nTPM: 10.2
Sample A Female 12.1
Sample B Female 10.2
Sample C Male 14.3
Sample D Male 15.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 7.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 7.0
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.0
Sample A Male 7.7
Sample B Male 6.9
Sample C Female 8.5
Sample D Female 5.0
Hippocampal formation
nTPM: 7.3
Samples: 4

Max nTPM: 8.7
Min nTPM: 6.6
Sample A Male 6.7
Sample B Male 8.7
Sample C Female 6.6
Sample D Female 7.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.5
71456109 Antisense, RP_050706_01_B07, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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