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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.5 nTPM
HPA:53.5 nTPM
GTEx:52.8 nTPM
FANTOM5:123.6 Scaled Tags Per Million
Pig:24.5 nTPM
Mouse:8.3 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.6
1830 Male, age 51, unknown 53.2
2019 Male, age 18, unknown 51.8
1833 Male, age 53, unknown 49.8
2666 Male, age 74, left hemisphere 49.5
1870 Female, age 42, unknown 48.7
2411 Female, age 72, unknown 46.7
2586 Male, age 75, left hemisphere 46.3
2828 Female, age 72, unknown 45.3
1827 Male, age 72, unknown 38.3
2219 Male, age 76, both hemispheres 36.2
Dorsal raphe nucleus
nTPM: 37.7
2750 Male, age 76, both hemispheres 48.6
1828 Male, age 53, unknown 38.9
2016 Female, age 72, unknown 37.6
2047 Male, age 72, unknown 33.6
2298 Female, age 72, unknown 29.8
Inferior colliculus
nTPM: 37.4
1890 Male, age 53, unknown 41.2
2849 Male, age 72, unknown 38.1
1848 Female, age 42, unknown 37.5
2097 Female, age 72, unknown 32.8
Median raphe nucleus
nTPM: 41.8
2220 Male, age 76, midline 41.8
Pedunculopontine tegmental nucleus
nTPM: 46.6
2338 Male, age 61, both hemispheres 59.0
2334 Male, age 80, both hemispheres 42.9
1921 Female, age 85, both hemispheres 37.9
Periaquaductal grey, anterior
nTPM: 35.6
1795 Male, age 51, unknown 35.8
1947 Male, age 18, unknown 35.8
2502 Female, age 75, unknown 35.3
Periaquaductal grey, dorsal
nTPM: 34.6
2464 Female, age 72, unknown 39.6
1831 Male, age 72, unknown 37.6
2850 Male, age 76, both hemispheres 32.7
1840 Male, age 53, unknown 28.5
Periaquaductal grey, lateral
nTPM: 38.3
2272 Male, age 74, both hemispheres 41.8
2053 Male, age 18, unknown 38.1
2140 Male, age 76, both hemispheres 35.1
Pretectal area
nTPM: 37.3
2407 Male, age 75, both hemispheres 47.1
2316 Male, age 76, right hemisphere 46.3
1815 Male, age 53, unknown 39.9
2825 Male, age 18, unknown 38.5
1817 Female, age 42, unknown 37.1
2007 Male, age 72, unknown 37.0
2667 Female, age 75, unknown 35.1
2273 Male, age 74, both hemispheres 34.5
2224 Female, age 72, unknown 33.1
1944 Female, age 72, unknown 32.0
1816 Male, age 51, unknown 29.9
Red nucleus
nTPM: 53.5
2769 Male, age 72, unknown 59.2
1865 Male, age 51, unknown 59.0
1904 Male, age 53, unknown 58.7
2227 Male, age 72, unknown 58.5
2823 Male, age 76, right hemisphere 56.9
2785 Male, age 18, unknown 54.2
2584 Male, age 75, left hemisphere 53.4
2588 Male, age 74, left hemisphere 51.5
2503 Female, age 72, unknown 50.9
1821 Female, age 72, unknown 48.5
1954 Female, age 42, unknown 46.5
2725 Female, age 75, unknown 44.9
Substantia nigra
nTPM: 42.1
2590 Female, age 75, unknown 54.5
2583 Male, age 75, right hemisphere 53.2
2409 Female, age 72, unknown 44.8
2699 Male, age 18, unknown 44.2
2665 Male, age 74, both hemispheres 43.8
1851 Male, age 51, unknown 41.5
1941 Male, age 53, unknown 35.9
1889 Female, age 72, unknown 35.7
2241 Male, age 72, unknown 33.6
1916 Female, age 42, unknown 33.5
Superior colliculus
nTPM: 42.9
1913 Female, age 42, unknown 59.5
1995 Male, age 72, unknown 51.2
1839 Male, age 51, unknown 43.5
2587 Male, age 74, left hemisphere 42.3
2664 Male, age 75, both hemispheres 42.2
1895 Male, age 76, right hemisphere 40.6
2668 Female, age 75, unknown 40.1
1796 Male, age 53, unknown 39.1
2087 Female, age 72, unknown 36.7
2261 Male, age 18, unknown 33.4
Ventral tegmental area
nTPM: 42.1
2223 Female, age 72, unknown 51.1
2021 Male, age 53, unknown 43.2
2410 Female, age 72, unknown 40.8
1942 Male, age 51, unknown 40.6
2218 Male, age 76, both hemispheres 40.1
1915 Female, age 42, unknown 37.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.8
Samples: 139

Max nTPM: 171.7
Min nTPM: 16.9
Std nTPM: 23.2
Median nTPM: 50.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 171.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 146.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 136.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 118.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 109.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 99.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 97.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 86.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 84.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 80.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 79.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 123.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 123.6
FF:10158-103A5 76 years, female 123.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.5
Pig sample Sample description nTPM
Midbrain
nTPM: 24.3
Samples: 4

Max nTPM: 43.1
Min nTPM: 15.0
Sample A Female 43.1
Sample B Female 20.6
Sample C Male 18.4
Sample D Male 15.0
Periaqueductal gray
nTPM: 17.3
Samples: 3

Max nTPM: 18.3
Min nTPM: 16.0
Sample B Female 18.3
Sample C Male 17.7
Sample D Male 16.0
Substantia nigra
nTPM: 24.6
Samples: 4

Max nTPM: 31.4
Min nTPM: 22.1
Sample A Female 22.1
Sample B Female 22.3
Sample C Male 22.5
Sample D Male 31.4
Superior colliculi
nTPM: 17.9
Samples: 4

Max nTPM: 20.6
Min nTPM: 13.6
Sample A Female 19.1
Sample B Female 13.6
Sample C Male 18.2
Sample D Male 20.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.3
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.7
Sample A Male 8.6
Sample B Male 7.7
Sample C Female 8.0
Sample D Female 8.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
71456109 Antisense, RP_050706_01_B07, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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