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BCL7C
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:43.8 nTPM
HPA:43.8 nTPM
GTEx:22.1 nTPM
FANTOM5:19.1 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:12.2 nTPM
Allen mouse:1.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA018676
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.8
2289 Male, age 61, right hemisphere 41.4
2481 Female, age 94, left hemisphere 39.7
2288 Male, age 75, left hemisphere 39.2
1854 Male, age 80, left hemisphere 38.8
1857 Female, age 85, left hemisphere 38.8
2290 Female, age 72, unknown 38.0
2846 Female, age 79, unknown 37.4
1781 Male, age 74, unknown 36.8
Claustrum
nTPM: 36.9
2292 Female, age 85, both hemispheres 39.8
2196 Female, age 79, unknown 38.3
1956 Male, age 74, unknown 37.8
2491 Male, age 75, both hemispheres 37.0
2284 Female, age 91, both hemispheres 36.9
2198 Male, age 80, both hemispheres 36.2
2645 Female, age 72, unknown 36.2
2568 Male, age 61, both hemispheres 35.5
2392 Female, age 94, both hemispheres 34.4
Globus pallidus, externus
nTPM: 43.8
2646 Male, age 61, right hemisphere 47.6
2567 Female, age 72, unknown 46.9
1996 Male, age 80, right hemisphere 44.1
2772 Female, age 79, unknown 43.1
2395 Male, age 75, both hemispheres 37.4
Globus pallidus, internus
nTPM: 43.0
2566 Female, age 72, unknown 48.1
2778 Female, age 91, both hemispheres 43.5
2111 Female, age 85, right hemisphere 42.7
2483 Female, age 94, right hemisphere 42.5
2037 Male, age 80, right hemisphere 42.1
1818 Male, age 74, unknown 41.2
2287 Male, age 75, right hemisphere 40.6
Nucleus accumbens
nTPM: 40.1
2732 Male, age 80, right hemisphere 44.0
2698 Female, age 72, unknown 41.3
1806 Female, age 85, left hemisphere 40.6
1856 Female, age 91, right hemisphere 40.4
2824 Male, age 61, right hemisphere 39.8
1783 Male, age 74, unknown 38.8
2391 Female, age 94, left hemisphere 38.2
2286 Male, age 75, left hemisphere 37.9
Nucleus basalis of Meynert
nTPM: 40.9
2569 Male, age 61, both hemispheres 49.3
2484 Female, age 94, left hemisphere 38.5
2821 Male, age 75, both hemispheres 38.3
2393 Male, age 80, right hemisphere 37.7
Nucleus of the diagonal band
nTPM: 36.4
1979 Male, age 74, unknown 41.3
2775 Male, age 80, right hemisphere 37.2
2195 Female, age 85, both hemispheres 36.9
1812 Female, age 91, both hemispheres 33.7
2029 Male, age 61, right hemisphere 32.8
Olfactory tubercle
nTPM: 36.1
1998 Female, age 91, both hemispheres 37.2
2856 Male, age 75, right hemisphere 36.3
1846 Male, age 80, right hemisphere 35.6
2487 Female, age 94, left hemisphere 35.5
Putamen
nTPM: 38.9
2647 Male, age 75, left hemisphere 41.5
2489 Female, age 72, unknown 41.0
2482 Female, age 94, left hemisphere 39.6
1937 Female, age 91, right hemisphere 38.8
1838 Male, age 80, right hemisphere 38.2
1829 Male, age 74, unknown 37.1
2466 Female, age 79, unknown 36.3
Septal nuclei
nTPM: 38.4
2059 Female, age 85, both hemispheres 41.8
2199 Male, age 80, right hemisphere 41.2
2394 Male, age 61, left hemisphere 40.2
1960 Male, age 74, unknown 39.7
2009 Female, age 91, both hemispheres 35.9
2629 Female, age 94, right hemisphere 35.3
2031 Female, age 72, unknown 34.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.6
Samples: 246

Max nTPM: 43.4
Min nTPM: 7.2
Std nTPM: 6.1
Median nTPM: 17.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 43.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 38.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 35.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 34.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 34.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 33.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 33.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 33.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 33.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 33.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 31.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.1
Samples: 246

Max nTPM: 82.6
Min nTPM: 10.1
Std nTPM: 8.9
Median nTPM: 20.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 82.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 54.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 47.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 46.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 46.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 43.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 43.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 42.5
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 42.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 40.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 40.9
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Brain - Putamen (basal ganglia)
Average nTPM: 21.1
Samples: 205

Max nTPM: 53.8
Min nTPM: 9.7
Std nTPM: 7.0
Median nTPM: 19.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 53.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 42.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 41.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 41.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 39.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 37.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 36.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 36.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 36.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 35.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 35.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.5
FF:10164-103B2 76 years, female 18.5
Globus pallidus
Scaled Tags Per Million: 19.1
FF:10161-103A8 76 years, female 21.6
FF:10175-103C4 60 years, female 16.5
Nucleus accumbens
Scaled Tags Per Million: 10.7
FF:10037-101F1 23-56 years, mixed 10.7
Putamen
Scaled Tags Per Million: 15.4
FF:10176-103C5 60 years, female 15.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.1
Pig sample Sample description nTPM
Caudate
nTPM: 13.5
Samples: 4

Max nTPM: 15.7
Min nTPM: 12.2
Sample A Female 13.3
Sample B Female 15.7
Sample C Male 12.9
Sample D Male 12.2
Putamen
nTPM: 14.8
Samples: 4

Max nTPM: 19.8
Min nTPM: 11.0
Sample A Female 19.8
Sample B Female 11.0
Sample C Male 12.4
Sample D Male 15.8
Septum
nTPM: 18.1
Samples: 4

Max nTPM: 21.0
Min nTPM: 15.9
Sample A Female 18.7
Sample B Female 15.9
Sample C Male 21.0
Sample D Male 16.8
Ventral pallidum
nTPM: 16.4
Samples: 4

Max nTPM: 20.0
Min nTPM: 11.4
Sample A Female 11.4
Sample B Female 17.0
Sample C Male 20.0
Sample D Male 17.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.2
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.9
Sample A Male 6.9
Sample B Male 6.9
Sample C Female 7.2
Sample D Female 7.8
Septum
nTPM: 12.2
Samples: 4

Max nTPM: 13.1
Min nTPM: 9.7
Sample A Male 13.0
Sample B Male 13.1
Sample C Female 12.9
Sample D Female 9.7
Ventral forebrain
nTPM: 11.4
Samples: 4

Max nTPM: 11.6
Min nTPM: 11.0
Sample A Male 11.4
Sample B Male 11.5
Sample C Female 11.6
Sample D Female 11.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
633284 Antisense, RP_040907_02_D11, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 0.8
633284 Antisense, RP_040907_02_D11, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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