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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.8 nTPM
HPA:9.8 nTPM
GTEx:16.7 nTPM
FANTOM5:31.5 Scaled Tags Per Million
Pig:15.2 nTPM
Mouse:43.4 nTPM
Allen mouse:15.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.8
2289 Male, age 61, right hemisphere 18.2
2290 Female, age 72, unknown 13.7
2288 Male, age 75, left hemisphere 10.0
1857 Female, age 85, left hemisphere 9.6
2846 Female, age 79, unknown 9.2
1854 Male, age 80, left hemisphere 8.3
1781 Male, age 74, unknown 6.5
2481 Female, age 94, left hemisphere 3.1
Claustrum
nTPM: 2.2
2645 Female, age 72, unknown 5.9
2568 Male, age 61, both hemispheres 3.9
2196 Female, age 79, unknown 3.5
2284 Female, age 91, both hemispheres 2.9
1956 Male, age 74, unknown 1.5
2198 Male, age 80, both hemispheres 1.2
2491 Male, age 75, both hemispheres 0.7
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.3
2646 Male, age 61, right hemisphere 1.6
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 7.1
2824 Male, age 61, right hemisphere 11.6
1783 Male, age 74, unknown 10.6
1856 Female, age 91, right hemisphere 8.9
1806 Female, age 85, left hemisphere 8.0
2286 Male, age 75, left hemisphere 6.6
2698 Female, age 72, unknown 6.3
2732 Male, age 80, right hemisphere 4.8
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 6.8
2484 Female, age 94, left hemisphere 11.5
2569 Male, age 61, both hemispheres 8.3
2393 Male, age 80, right hemisphere 4.4
2821 Male, age 75, both hemispheres 3.2
Nucleus of the diagonal band
nTPM: 4.3
1979 Male, age 74, unknown 7.7
2195 Female, age 85, both hemispheres 4.9
2775 Male, age 80, right hemisphere 3.5
2029 Male, age 61, right hemisphere 3.1
1812 Female, age 91, both hemispheres 2.1
Olfactory tubercle
nTPM: 2.7
2487 Female, age 94, left hemisphere 3.5
1998 Female, age 91, both hemispheres 3.3
2856 Male, age 75, right hemisphere 3.2
1846 Male, age 80, right hemisphere 0.9
Putamen
nTPM: 8.5
1838 Male, age 80, right hemisphere 11.6
2489 Female, age 72, unknown 10.8
2647 Male, age 75, left hemisphere 9.6
1937 Female, age 91, right hemisphere 8.4
1829 Male, age 74, unknown 8.1
2466 Female, age 79, unknown 7.2
2482 Female, age 94, left hemisphere 3.7
Septal nuclei
nTPM: 4.3
1960 Male, age 74, unknown 9.6
2059 Female, age 85, both hemispheres 7.5
2629 Female, age 94, right hemisphere 4.4
2031 Female, age 72, unknown 4.1
2009 Female, age 91, both hemispheres 3.0
2199 Male, age 80, right hemisphere 1.7
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.8
Samples: 246

Max nTPM: 30.2
Min nTPM: 1.4
Std nTPM: 5.6
Median nTPM: 13.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 30.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 29.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 29.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 27.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 26.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 25.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 25.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 25.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 24.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 23.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 23.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.7
Samples: 246

Max nTPM: 38.7
Min nTPM: 0.8
Std nTPM: 7.1
Median nTPM: 16.2
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 38.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 34.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 33.9
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 33.1
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 32.9
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 32.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 30.7
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 30.1
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 30.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 29.8
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 29.2
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Brain - Putamen (basal ganglia)
Average nTPM: 13.0
Samples: 205

Max nTPM: 32.5
Min nTPM: 1.9
Std nTPM: 5.7
Median nTPM: 12.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 32.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 32.3
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 27.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 27.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 26.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 25.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 24.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 24.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 24.0
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 23.4
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 23.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.3
FF:10164-103B2 76 years, female 20.3
Globus pallidus
Scaled Tags Per Million: 13.9
FF:10175-103C4 60 years, female 19.7
FF:10161-103A8 76 years, female 8.1
Nucleus accumbens
Scaled Tags Per Million: 31.5
FF:10037-101F1 23-56 years, mixed 31.5
Putamen
Scaled Tags Per Million: 26.3
FF:10176-103C5 60 years, female 26.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.2
Pig sample Sample description nTPM
Caudate
nTPM: 15.3
Samples: 4

Max nTPM: 18.1
Min nTPM: 11.6
Sample A Female 11.6
Sample B Female 18.1
Sample C Male 14.7
Sample D Male 16.6
Putamen
nTPM: 12.0
Samples: 4

Max nTPM: 16.1
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 15.5
Sample C Male 10.2
Sample D Male 16.1
Septum
nTPM: 9.7
Samples: 4

Max nTPM: 10.0
Min nTPM: 9.3
Sample A Female 10.0
Sample B Female 9.9
Sample C Male 9.3
Sample D Male 9.5
Ventral pallidum
nTPM: 11.0
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.5
Sample A Female 11.0
Sample B Female 11.4
Sample C Male 9.5
Sample D Male 12.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.5
Samples: 4

Max nTPM: 45.6
Min nTPM: 33.6
Sample A Male 36.2
Sample B Male 45.6
Sample C Female 33.6
Sample D Female 34.7
Septum
nTPM: 42.8
Samples: 4

Max nTPM: 47.8
Min nTPM: 36.9
Sample A Male 47.8
Sample B Male 36.9
Sample C Female 45.1
Sample D Female 41.2
Ventral forebrain
nTPM: 43.4
Samples: 4

Max nTPM: 47.9
Min nTPM: 38.0
Sample A Male 38.0
Sample B Male 44.5
Sample C Female 47.9
Sample D Female 43.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 15.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 14.5
74882515 Antisense, RP_060315_04_E10, Mouse strain C57BL/6J (56 days, male) 14.9
69671576 Antisense, RP_050428_01_G11, Mouse strain C57BL/6J (56 days, male) 14.0
Pallidum
Expression energy: 15.4
74882515 Antisense, RP_060315_04_E10, Mouse strain C57BL/6J (56 days, male) 15.6
69671576 Antisense, RP_050428_01_G11, Mouse strain C57BL/6J (56 days, male) 15.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.