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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.5 nTPM
HPA:102.5 nTPM
GTEx:95.1 nTPM
FANTOM5:42.8 Scaled Tags Per Million
Pig:30.9 nTPM
Mouse:105.1 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 102.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 100.0
2586 Male, age 75, left hemisphere 131.7
2019 Male, age 18, unknown 115.8
2828 Female, age 72, unknown 98.3
2411 Female, age 72, unknown 96.2
2666 Male, age 74, left hemisphere 95.3
1830 Male, age 51, unknown 94.5
1827 Male, age 72, unknown 93.6
1833 Male, age 53, unknown 93.1
1870 Female, age 42, unknown 92.9
2219 Male, age 76, both hemispheres 88.7
Dorsal raphe nucleus
nTPM: 92.8
1828 Male, age 53, unknown 100.3
2047 Male, age 72, unknown 95.7
2750 Male, age 76, both hemispheres 93.8
2016 Female, age 72, unknown 90.4
2298 Female, age 72, unknown 83.9
Inferior colliculus
nTPM: 93.0
1848 Female, age 42, unknown 98.5
1890 Male, age 53, unknown 93.4
2849 Male, age 72, unknown 92.5
2097 Female, age 72, unknown 87.4
Median raphe nucleus
nTPM: 90.8
2220 Male, age 76, midline 90.8
Pedunculopontine tegmental nucleus
nTPM: 91.8
2338 Male, age 61, both hemispheres 99.2
2334 Male, age 80, both hemispheres 92.5
1921 Female, age 85, both hemispheres 83.6
Periaquaductal grey, anterior
nTPM: 93.7
2502 Female, age 75, unknown 99.2
1795 Male, age 51, unknown 92.5
1947 Male, age 18, unknown 89.3
Periaquaductal grey, dorsal
nTPM: 83.1
2464 Female, age 72, unknown 88.4
1840 Male, age 53, unknown 86.8
2850 Male, age 76, both hemispheres 79.2
1831 Male, age 72, unknown 77.8
Periaquaductal grey, lateral
nTPM: 81.0
2140 Male, age 76, both hemispheres 81.7
2053 Male, age 18, unknown 81.2
2272 Male, age 74, both hemispheres 80.1
Pretectal area
nTPM: 92.2
2007 Male, age 72, unknown 111.3
1817 Female, age 42, unknown 106.3
1816 Male, age 51, unknown 98.4
1944 Female, age 72, unknown 95.2
2407 Male, age 75, both hemispheres 94.8
1815 Male, age 53, unknown 92.6
2316 Male, age 76, right hemisphere 86.1
2667 Female, age 75, unknown 85.7
2825 Male, age 18, unknown 83.5
2224 Female, age 72, unknown 81.3
2273 Male, age 74, both hemispheres 78.7
Red nucleus
nTPM: 102.5
2785 Male, age 18, unknown 114.8
2588 Male, age 74, left hemisphere 109.0
2584 Male, age 75, left hemisphere 108.7
2227 Male, age 72, unknown 107.6
2769 Male, age 72, unknown 106.3
2503 Female, age 72, unknown 102.5
1821 Female, age 72, unknown 99.4
1954 Female, age 42, unknown 99.2
1904 Male, age 53, unknown 98.3
1865 Male, age 51, unknown 97.7
2823 Male, age 76, right hemisphere 95.4
2725 Female, age 75, unknown 91.3
Substantia nigra
nTPM: 101.2
2665 Male, age 74, both hemispheres 114.9
1916 Female, age 42, unknown 109.2
1851 Male, age 51, unknown 106.7
2583 Male, age 75, right hemisphere 104.4
2590 Female, age 75, unknown 104.3
1941 Male, age 53, unknown 100.8
1889 Female, age 72, unknown 99.1
2699 Male, age 18, unknown 92.6
2241 Male, age 72, unknown 90.2
2409 Female, age 72, unknown 90.2
Superior colliculus
nTPM: 93.9
2664 Male, age 75, both hemispheres 110.2
2668 Female, age 75, unknown 102.0
2087 Female, age 72, unknown 95.1
1796 Male, age 53, unknown 93.6
1839 Male, age 51, unknown 93.1
1895 Male, age 76, right hemisphere 91.2
2261 Male, age 18, unknown 91.0
2587 Male, age 74, left hemisphere 90.5
1995 Male, age 72, unknown 87.4
1913 Female, age 42, unknown 84.5
Ventral tegmental area
nTPM: 95.8
1915 Female, age 42, unknown 100.5
2410 Female, age 72, unknown 100.1
2223 Female, age 72, unknown 97.1
2218 Male, age 76, both hemispheres 94.1
1942 Male, age 51, unknown 92.9
2021 Male, age 53, unknown 89.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.1
Samples: 139

Max nTPM: 151.2
Min nTPM: 41.2
Std nTPM: 20.0
Median nTPM: 96.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 151.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 138.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 134.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 133.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 132.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 132.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 132.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 128.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 125.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 125.3
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 123.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.8
FF:10158-103A5 76 years, female 42.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.9
Pig sample Sample description nTPM
Midbrain
nTPM: 25.0
Samples: 4

Max nTPM: 35.1
Min nTPM: 21.1
Sample A Female 21.1
Sample B Female 22.0
Sample C Male 35.1
Sample D Male 21.6
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 19.7
Min nTPM: 13.5
Sample B Female 19.7
Sample C Male 19.1
Sample D Male 13.5
Substantia nigra
nTPM: 22.6
Samples: 4

Max nTPM: 34.5
Min nTPM: 15.4
Sample A Female 34.5
Sample B Female 16.6
Sample C Male 23.8
Sample D Male 15.4
Superior colliculi
nTPM: 30.9
Samples: 4

Max nTPM: 37.2
Min nTPM: 24.5
Sample A Female 34.4
Sample B Female 24.5
Sample C Male 37.2
Sample D Male 27.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 105.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 105.1
Samples: 4

Max nTPM: 111.3
Min nTPM: 100.7
Sample A Male 111.3
Sample B Male 101.7
Sample C Female 100.7
Sample D Female 106.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
68076533 Antisense, RP_040923_02_E04, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.