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SMARCB1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:2.5 nTPM
HPA:2.5 nTPM
GTEx:44.9 nTPM
FANTOM5:61.9 Scaled Tags Per Million
Pig:34.2 nTPM
Mouse:72.1 nTPM
Allen mouse:10.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA018248Antibody HPA019127Antibody CAB009196
Glial cells HighHighHigh
Neuronal cells HighHighMedium







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.6
1857 Female, age 85, left hemisphere 2.6
2289 Male, age 61, right hemisphere 2.2
2846 Female, age 79, unknown 1.9
2288 Male, age 75, left hemisphere 1.8
2290 Female, age 72, unknown 1.4
1781 Male, age 74, unknown 1.2
2481 Female, age 94, left hemisphere 1.0
1854 Male, age 80, left hemisphere 0.9
Claustrum
nTPM: 1.7
2196 Female, age 79, unknown 3.0
2292 Female, age 85, both hemispheres 2.2
1956 Male, age 74, unknown 2.0
2491 Male, age 75, both hemispheres 1.9
2568 Male, age 61, both hemispheres 1.8
2645 Female, age 72, unknown 1.7
2392 Female, age 94, both hemispheres 1.6
2284 Female, age 91, both hemispheres 1.3
2198 Male, age 80, both hemispheres 0.2
Globus pallidus, externus
nTPM: 2.5
1996 Male, age 80, right hemisphere 3.1
2772 Female, age 79, unknown 2.7
2567 Female, age 72, unknown 2.5
2395 Male, age 75, both hemispheres 2.4
2646 Male, age 61, right hemisphere 2.0
Globus pallidus, internus
nTPM: 1.8
2778 Female, age 91, both hemispheres 2.5
2111 Female, age 85, right hemisphere 1.9
2483 Female, age 94, right hemisphere 1.9
2037 Male, age 80, right hemisphere 1.7
2287 Male, age 75, right hemisphere 1.7
1818 Male, age 74, unknown 1.4
2566 Female, age 72, unknown 1.4
Nucleus accumbens
nTPM: 1.0
2391 Female, age 94, left hemisphere 2.6
2286 Male, age 75, left hemisphere 1.9
1806 Female, age 85, left hemisphere 1.1
1856 Female, age 91, right hemisphere 0.8
2732 Male, age 80, right hemisphere 0.8
2824 Male, age 61, right hemisphere 0.5
1783 Male, age 74, unknown 0.4
2698 Female, age 72, unknown 0.4
Nucleus basalis of Meynert
nTPM: 1.9
2569 Male, age 61, both hemispheres 2.4
2484 Female, age 94, left hemisphere 2.0
2821 Male, age 75, both hemispheres 1.9
2393 Male, age 80, right hemisphere 1.3
Nucleus of the diagonal band
nTPM: 1.2
2775 Male, age 80, right hemisphere 1.7
2029 Male, age 61, right hemisphere 1.3
1979 Male, age 74, unknown 1.2
1812 Female, age 91, both hemispheres 0.9
2195 Female, age 85, both hemispheres 0.6
Olfactory tubercle
nTPM: 2.1
1846 Male, age 80, right hemisphere 5.3
2487 Female, age 94, left hemisphere 1.3
1998 Female, age 91, both hemispheres 1.1
2856 Male, age 75, right hemisphere 0.8
Putamen
nTPM: 2.0
1838 Male, age 80, right hemisphere 6.5
2466 Female, age 79, unknown 1.7
2647 Male, age 75, left hemisphere 1.5
2482 Female, age 94, left hemisphere 1.2
1937 Female, age 91, right hemisphere 1.1
2489 Female, age 72, unknown 1.1
1829 Male, age 74, unknown 0.7
Septal nuclei
nTPM: 1.4
1960 Male, age 74, unknown 3.6
2199 Male, age 80, right hemisphere 1.8
2009 Female, age 91, both hemispheres 1.7
2031 Female, age 72, unknown 1.1
2059 Female, age 85, both hemispheres 0.8
2394 Male, age 61, left hemisphere 0.8
2629 Female, age 94, right hemisphere 0.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.1
Samples: 246

Max nTPM: 66.0
Min nTPM: 25.4
Std nTPM: 6.3
Median nTPM: 42.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 66.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 64.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 63.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 62.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 60.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 58.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 57.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 57.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 56.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 56.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 55.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.9
Samples: 246

Max nTPM: 66.1
Min nTPM: 30.5
Std nTPM: 6.3
Median nTPM: 44.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 66.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 63.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 63.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 61.6
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 60.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 59.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 58.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 58.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 58.0
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 57.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 57.3
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Brain - Putamen (basal ganglia)
Average nTPM: 43.2
Samples: 205

Max nTPM: 65.4
Min nTPM: 28.9
Std nTPM: 6.4
Median nTPM: 42.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 65.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 65.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 59.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 59.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 56.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 55.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 55.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 55.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 54.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 54.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 54.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.7
FF:10164-103B2 76 years, female 59.7
Globus pallidus
Scaled Tags Per Million: 59.4
FF:10161-103A8 76 years, female 62.1
FF:10175-103C4 60 years, female 56.8
Nucleus accumbens
Scaled Tags Per Million: 61.9
FF:10037-101F1 23-56 years, mixed 61.9
Putamen
Scaled Tags Per Million: 58.8
FF:10176-103C5 60 years, female 58.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 34.2
Pig sample Sample description nTPM
Caudate
nTPM: 34.2
Samples: 4

Max nTPM: 38.4
Min nTPM: 31.3
Sample A Female 31.3
Sample B Female 35.3
Sample C Male 38.4
Sample D Male 31.8
Putamen
nTPM: 34.2
Samples: 4

Max nTPM: 40.0
Min nTPM: 26.5
Sample A Female 34.0
Sample B Female 26.5
Sample C Male 40.0
Sample D Male 36.1
Septum
nTPM: 34.0
Samples: 4

Max nTPM: 36.3
Min nTPM: 31.3
Sample A Female 36.3
Sample B Female 31.3
Sample C Male 34.7
Sample D Male 33.8
Ventral pallidum
nTPM: 33.2
Samples: 4

Max nTPM: 37.1
Min nTPM: 29.4
Sample A Female 29.4
Sample B Female 37.1
Sample C Male 33.7
Sample D Male 32.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 72.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 72.1
Samples: 4

Max nTPM: 73.8
Min nTPM: 70.7
Sample A Male 71.9
Sample B Male 72.0
Sample C Female 70.7
Sample D Female 73.8
Septum
nTPM: 62.6
Samples: 4

Max nTPM: 65.6
Min nTPM: 58.5
Sample A Male 65.6
Sample B Male 64.3
Sample C Female 61.8
Sample D Female 58.5
Ventral forebrain
nTPM: 68.6
Samples: 4

Max nTPM: 71.6
Min nTPM: 64.5
Sample A Male 71.6
Sample B Male 68.2
Sample C Female 64.5
Sample D Female 70.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.6
68522368 Antisense, RP_050118_01_H09, Mouse strain C57BL/6J (56 days, male) 10.6
Pallidum
Expression energy: 8.0
68522368 Antisense, RP_050118_01_H09, Mouse strain C57BL/6J (56 days, male) 8.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.