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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.7 nTPM
HPA:4.7 nTPM
GTEx:42.3 nTPM
FANTOM5:37.7 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 4.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2.2
2586 Male, age 75, left hemisphere 5.6
2828 Female, age 72, unknown 4.5
1870 Female, age 42, unknown 3.2
1827 Male, age 72, unknown 2.3
2666 Male, age 74, left hemisphere 1.8
2019 Male, age 18, unknown 1.7
1833 Male, age 53, unknown 1.4
1830 Male, age 51, unknown 1.2
2411 Female, age 72, unknown 0.7
2219 Male, age 76, both hemispheres 0.0
Dorsal raphe nucleus
nTPM: 2.5
2298 Female, age 72, unknown 3.3
2016 Female, age 72, unknown 2.6
2750 Male, age 76, both hemispheres 2.6
2047 Male, age 72, unknown 2.5
1828 Male, age 53, unknown 1.8
Inferior colliculus
nTPM: 1.4
2849 Male, age 72, unknown 2.5
1848 Female, age 42, unknown 2.3
1890 Male, age 53, unknown 1.0
2097 Female, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.8
2220 Male, age 76, midline 0.8
Pedunculopontine tegmental nucleus
nTPM: 1.1
1921 Female, age 85, both hemispheres 3.2
2334 Male, age 80, both hemispheres 0.1
2338 Male, age 61, both hemispheres 0.1
Periaquaductal grey, anterior
nTPM: 4.3
1795 Male, age 51, unknown 6.5
1947 Male, age 18, unknown 3.4
2502 Female, age 75, unknown 3.0
Periaquaductal grey, dorsal
nTPM: 4.2
2850 Male, age 76, both hemispheres 5.9
1831 Male, age 72, unknown 3.8
1840 Male, age 53, unknown 3.7
2464 Female, age 72, unknown 3.3
Periaquaductal grey, lateral
nTPM: 4.7
2140 Male, age 76, both hemispheres 7.0
2053 Male, age 18, unknown 4.6
2272 Male, age 74, both hemispheres 2.6
Pretectal area
nTPM: 4.5
2667 Female, age 75, unknown 8.2
2316 Male, age 76, right hemisphere 6.0
2273 Male, age 74, both hemispheres 5.9
1944 Female, age 72, unknown 4.8
2407 Male, age 75, both hemispheres 4.3
1815 Male, age 53, unknown 4.2
2825 Male, age 18, unknown 4.0
1816 Male, age 51, unknown 3.5
2007 Male, age 72, unknown 3.2
2224 Female, age 72, unknown 2.8
1817 Female, age 42, unknown 2.1
Red nucleus
nTPM: 2.8
2823 Male, age 76, right hemisphere 4.1
2227 Male, age 72, unknown 3.9
1954 Female, age 42, unknown 3.8
2588 Male, age 74, left hemisphere 3.5
2725 Female, age 75, unknown 3.4
2769 Male, age 72, unknown 3.3
2503 Female, age 72, unknown 3.0
1865 Male, age 51, unknown 2.5
1904 Male, age 53, unknown 2.4
2785 Male, age 18, unknown 2.2
1821 Female, age 72, unknown 1.2
2584 Male, age 75, left hemisphere 0.3
Substantia nigra
nTPM: 2.3
2583 Male, age 75, right hemisphere 3.6
2699 Male, age 18, unknown 3.5
2665 Male, age 74, both hemispheres 3.4
1916 Female, age 42, unknown 3.1
1851 Male, age 51, unknown 2.8
2590 Female, age 75, unknown 1.6
2409 Female, age 72, unknown 1.5
1941 Male, age 53, unknown 1.3
1889 Female, age 72, unknown 1.2
2241 Male, age 72, unknown 0.4
Superior colliculus
nTPM: 3.4
2664 Male, age 75, both hemispheres 6.2
1796 Male, age 53, unknown 5.5
2087 Female, age 72, unknown 3.8
2261 Male, age 18, unknown 3.7
1995 Male, age 72, unknown 3.5
1913 Female, age 42, unknown 2.6
1895 Male, age 76, right hemisphere 2.4
1839 Male, age 51, unknown 2.3
2587 Male, age 74, left hemisphere 1.9
2668 Female, age 75, unknown 1.6
Ventral tegmental area
nTPM: 2.2
2021 Male, age 53, unknown 3.9
1942 Male, age 51, unknown 2.7
2410 Female, age 72, unknown 2.0
1915 Female, age 42, unknown 1.9
2218 Male, age 76, both hemispheres 1.9
2223 Female, age 72, unknown 0.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.3
Samples: 139

Max nTPM: 169.2
Min nTPM: 4.8
Std nTPM: 25.0
Median nTPM: 38.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 169.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 114.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 110.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 102.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 102.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 95.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 89.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 88.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 88.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 85.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 78.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.7
FF:10158-103A5 76 years, female 37.7

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