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SNU13
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:159.4 nTPM
HPA:159.4 nTPM
GTEx:39.5 nTPM
FANTOM5:101.6 Scaled Tags Per Million
Pig:0.2 nTPM
Mouse:81.7 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 159.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 142.2
2411 Female, age 72, unknown 153.9
1827 Male, age 72, unknown 152.9
1870 Female, age 42, unknown 146.2
1833 Male, age 53, unknown 143.2
2219 Male, age 76, both hemispheres 142.9
2828 Female, age 72, unknown 138.9
2666 Male, age 74, left hemisphere 138.8
1830 Male, age 51, unknown 136.4
2019 Male, age 18, unknown 136.1
2586 Male, age 75, left hemisphere 132.7
Dorsal raphe nucleus
nTPM: 150.8
2298 Female, age 72, unknown 164.4
2047 Male, age 72, unknown 153.0
1828 Male, age 53, unknown 148.7
2750 Male, age 76, both hemispheres 146.5
2016 Female, age 72, unknown 141.3
Inferior colliculus
nTPM: 149.5
2097 Female, age 72, unknown 155.1
2849 Male, age 72, unknown 155.0
1848 Female, age 42, unknown 148.5
1890 Male, age 53, unknown 139.2
Median raphe nucleus
nTPM: 159.4
2220 Male, age 76, midline 159.4
Pedunculopontine tegmental nucleus
nTPM: 152.4
2334 Male, age 80, both hemispheres 162.3
1921 Female, age 85, both hemispheres 157.2
2338 Male, age 61, both hemispheres 137.7
Periaquaductal grey, anterior
nTPM: 147.5
1947 Male, age 18, unknown 150.7
2502 Female, age 75, unknown 145.9
1795 Male, age 51, unknown 145.7
Periaquaductal grey, dorsal
nTPM: 146.4
1840 Male, age 53, unknown 160.1
2850 Male, age 76, both hemispheres 144.9
2464 Female, age 72, unknown 142.0
1831 Male, age 72, unknown 138.5
Periaquaductal grey, lateral
nTPM: 142.2
2272 Male, age 74, both hemispheres 145.1
2140 Male, age 76, both hemispheres 141.9
2053 Male, age 18, unknown 139.7
Pretectal area
nTPM: 144.9
2224 Female, age 72, unknown 158.7
2825 Male, age 18, unknown 151.8
1817 Female, age 42, unknown 147.0
1944 Female, age 72, unknown 146.9
1816 Male, age 51, unknown 146.5
2007 Male, age 72, unknown 145.7
2273 Male, age 74, both hemispheres 144.8
2667 Female, age 75, unknown 142.0
1815 Male, age 53, unknown 139.8
2316 Male, age 76, right hemisphere 138.6
2407 Male, age 75, both hemispheres 131.6
Red nucleus
nTPM: 137.7
2725 Female, age 75, unknown 153.1
2588 Male, age 74, left hemisphere 144.3
1821 Female, age 72, unknown 144.1
2503 Female, age 72, unknown 140.6
1954 Female, age 42, unknown 137.9
2227 Male, age 72, unknown 137.5
2769 Male, age 72, unknown 136.9
2584 Male, age 75, left hemisphere 135.5
2785 Male, age 18, unknown 133.2
1865 Male, age 51, unknown 130.2
2823 Male, age 76, right hemisphere 130.0
1904 Male, age 53, unknown 129.4
Substantia nigra
nTPM: 150.5
1916 Female, age 42, unknown 168.4
1941 Male, age 53, unknown 158.9
2409 Female, age 72, unknown 156.4
2241 Male, age 72, unknown 156.2
1851 Male, age 51, unknown 154.0
2699 Male, age 18, unknown 148.9
1889 Female, age 72, unknown 148.3
2665 Male, age 74, both hemispheres 143.9
2590 Female, age 75, unknown 139.3
2583 Male, age 75, right hemisphere 131.0
Superior colliculus
nTPM: 140.1
1839 Male, age 51, unknown 152.5
1796 Male, age 53, unknown 150.2
1895 Male, age 76, right hemisphere 144.9
2261 Male, age 18, unknown 143.6
2087 Female, age 72, unknown 143.1
2587 Male, age 74, left hemisphere 142.6
2668 Female, age 75, unknown 138.1
2664 Male, age 75, both hemispheres 130.6
1913 Female, age 42, unknown 129.3
1995 Male, age 72, unknown 125.8
Ventral tegmental area
nTPM: 151.8
1915 Female, age 42, unknown 161.0
2218 Male, age 76, both hemispheres 158.1
2410 Female, age 72, unknown 157.9
1942 Male, age 51, unknown 148.8
2021 Male, age 53, unknown 144.5
2223 Female, age 72, unknown 140.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.5
Samples: 139

Max nTPM: 153.2
Min nTPM: 12.7
Std nTPM: 23.9
Median nTPM: 33.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 153.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 128.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 108.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 108.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 108.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 93.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 80.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 77.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 75.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 75.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 72.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.6
FF:10158-103A5 76 years, female 101.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.2
Pig sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.1
Samples: 3

Max nTPM: 0.3
Min nTPM: 0.0
Sample B Female 0.3
Sample C Male 0.1
Sample D Male 0.0
Substantia nigra
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Female 0.2
Sample B Female 0.1
Sample C Male 0.3
Sample D Male 0.0
Superior colliculi
nTPM: 0.2
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.3
Sample C Male 0.5
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 81.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.7
Samples: 4

Max nTPM: 84.5
Min nTPM: 78.9
Sample A Male 84.5
Sample B Male 83.4
Sample C Female 78.9
Sample D Female 80.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
68633125 Antisense, RP_050125_02_D11, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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