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XBP1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.9 nTPM
HPA:25.9 nTPM
GTEx:22.0 nTPM
FANTOM5:82.0 Scaled Tags Per Million
Pig:49.6 nTPM
Mouse:92.0 nTPM
Allen mouse:1.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 25.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 25.9
2481 Female, age 94, left hemisphere 30.2
1781 Male, age 74, unknown 29.7
1857 Female, age 85, left hemisphere 27.6
1854 Male, age 80, left hemisphere 26.1
2290 Female, age 72, unknown 25.8
2846 Female, age 79, unknown 25.1
2289 Male, age 61, right hemisphere 23.5
2288 Male, age 75, left hemisphere 19.0
Claustrum
nTPM: 22.7
2196 Female, age 79, unknown 26.8
2198 Male, age 80, both hemispheres 25.9
2292 Female, age 85, both hemispheres 23.6
1956 Male, age 74, unknown 22.8
2284 Female, age 91, both hemispheres 22.0
2491 Male, age 75, both hemispheres 21.2
2392 Female, age 94, both hemispheres 21.0
2645 Female, age 72, unknown 20.7
2568 Male, age 61, both hemispheres 20.2
Globus pallidus, externus
nTPM: 24.3
2395 Male, age 75, both hemispheres 26.5
1996 Male, age 80, right hemisphere 26.2
2772 Female, age 79, unknown 26.1
2646 Male, age 61, right hemisphere 21.7
2567 Female, age 72, unknown 21.0
Globus pallidus, internus
nTPM: 24.3
2483 Female, age 94, right hemisphere 29.8
2287 Male, age 75, right hemisphere 28.7
2037 Male, age 80, right hemisphere 24.1
2778 Female, age 91, both hemispheres 23.8
1818 Male, age 74, unknown 22.8
2566 Female, age 72, unknown 22.0
2111 Female, age 85, right hemisphere 18.8
Nucleus accumbens
nTPM: 25.1
1806 Female, age 85, left hemisphere 30.1
2391 Female, age 94, left hemisphere 27.1
1783 Male, age 74, unknown 26.7
1856 Female, age 91, right hemisphere 26.6
2698 Female, age 72, unknown 26.4
2732 Male, age 80, right hemisphere 23.1
2824 Male, age 61, right hemisphere 21.4
2286 Male, age 75, left hemisphere 19.6
Nucleus basalis of Meynert
nTPM: 23.1
2393 Male, age 80, right hemisphere 24.6
2569 Male, age 61, both hemispheres 23.7
2821 Male, age 75, both hemispheres 22.5
2484 Female, age 94, left hemisphere 21.5
Nucleus of the diagonal band
nTPM: 22.6
1812 Female, age 91, both hemispheres 25.5
1979 Male, age 74, unknown 23.5
2195 Female, age 85, both hemispheres 23.0
2775 Male, age 80, right hemisphere 22.1
2029 Male, age 61, right hemisphere 18.7
Olfactory tubercle
nTPM: 21.3
1846 Male, age 80, right hemisphere 22.4
2487 Female, age 94, left hemisphere 21.9
1998 Female, age 91, both hemispheres 21.4
2856 Male, age 75, right hemisphere 19.7
Putamen
nTPM: 23.5
2482 Female, age 94, left hemisphere 28.3
2466 Female, age 79, unknown 25.4
1937 Female, age 91, right hemisphere 24.4
1838 Male, age 80, right hemisphere 23.5
1829 Male, age 74, unknown 22.7
2489 Female, age 72, unknown 22.3
2647 Male, age 75, left hemisphere 18.1
Septal nuclei
nTPM: 23.3
2199 Male, age 80, right hemisphere 25.2
2031 Female, age 72, unknown 24.1
2629 Female, age 94, right hemisphere 24.1
2009 Female, age 91, both hemispheres 23.1
2059 Female, age 85, both hemispheres 22.7
2394 Male, age 61, left hemisphere 22.1
1960 Male, age 74, unknown 21.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.2
Samples: 246

Max nTPM: 117.8
Min nTPM: 8.8
Std nTPM: 11.6
Median nTPM: 17.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 117.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 66.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 65.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 63.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 58.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 51.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 50.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 47.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 45.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 45.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 43.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.0
Samples: 246

Max nTPM: 85.9
Min nTPM: 8.6
Std nTPM: 12.6
Median nTPM: 18.1
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 85.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 79.4
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 78.5
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 73.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 71.7
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 65.6
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 65.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 61.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 59.2
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 55.7
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 55.4
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Brain - Putamen (basal ganglia)
Average nTPM: 18.9
Samples: 205

Max nTPM: 80.3
Min nTPM: 8.7
Std nTPM: 10.1
Median nTPM: 16.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 80.3
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 72.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 58.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 56.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 52.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 51.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 45.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 42.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 41.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 36.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 35.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 82.0
FF:10164-103B2 76 years, female 82.0
Globus pallidus
Scaled Tags Per Million: 78.8
FF:10161-103A8 76 years, female 88.1
FF:10175-103C4 60 years, female 69.4
Nucleus accumbens
Scaled Tags Per Million: 49.7
FF:10037-101F1 23-56 years, mixed 49.7
Putamen
Scaled Tags Per Million: 46.6
FF:10176-103C5 60 years, female 46.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 49.6
Pig sample Sample description nTPM
Caudate
nTPM: 45.1
Samples: 4

Max nTPM: 48.6
Min nTPM: 40.2
Sample A Female 40.2
Sample B Female 46.0
Sample C Male 48.6
Sample D Male 45.6
Putamen
nTPM: 49.6
Samples: 4

Max nTPM: 52.9
Min nTPM: 45.3
Sample A Female 48.0
Sample B Female 45.3
Sample C Male 52.9
Sample D Male 52.2
Septum
nTPM: 46.2
Samples: 4

Max nTPM: 49.0
Min nTPM: 43.8
Sample A Female 47.4
Sample B Female 43.8
Sample C Male 49.0
Sample D Male 44.6
Ventral pallidum
nTPM: 41.9
Samples: 4

Max nTPM: 45.9
Min nTPM: 36.0
Sample A Female 41.2
Sample B Female 44.6
Sample C Male 36.0
Sample D Male 45.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 92.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 92.0
Samples: 4

Max nTPM: 106.8
Min nTPM: 81.0
Sample A Male 81.0
Sample B Male 87.9
Sample C Female 92.3
Sample D Female 106.8
Septum
nTPM: 86.2
Samples: 4

Max nTPM: 97.4
Min nTPM: 77.6
Sample A Male 80.3
Sample B Male 77.6
Sample C Female 97.4
Sample D Female 89.4
Ventral forebrain
nTPM: 81.0
Samples: 4

Max nTPM: 102.5
Min nTPM: 65.1
Sample A Male 65.1
Sample B Male 77.7
Sample C Female 102.5
Sample D Female 78.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
1119 Antisense, RP_Baylor_103124, Mouse strain C57BL/6J (56 days, male) 2.7
1120 Antisense, RP_Baylor_103124, Mouse strain C57BL/6J (56 days, male) 0.4
1121 Sense, RPS_Baylor_37066, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 1.5
1119 Antisense, RP_Baylor_103124, Mouse strain C57BL/6J (56 days, male) 3.1
1120 Antisense, RP_Baylor_103124, Mouse strain C57BL/6J (56 days, male) 0.5
1121 Sense, RPS_Baylor_37066, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.