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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:182.2 nTPM
HPA:182.2 nTPM
GTEx:85.7 nTPM
FANTOM5:509.4 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:24.6 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 182.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 140.8
2411 Female, age 72, unknown 171.7
1830 Male, age 51, unknown 170.7
2019 Male, age 18, unknown 165.3
1833 Male, age 53, unknown 156.6
1870 Female, age 42, unknown 155.6
2828 Female, age 72, unknown 145.1
2586 Male, age 75, left hemisphere 119.4
2666 Male, age 74, left hemisphere 117.4
1827 Male, age 72, unknown 103.7
2219 Male, age 76, both hemispheres 102.1
Dorsal raphe nucleus
nTPM: 110.9
2750 Male, age 76, both hemispheres 175.7
2016 Female, age 72, unknown 115.4
1828 Male, age 53, unknown 104.1
2047 Male, age 72, unknown 83.1
2298 Female, age 72, unknown 76.3
Inferior colliculus
nTPM: 95.5
1848 Female, age 42, unknown 100.4
2849 Male, age 72, unknown 96.4
1890 Male, age 53, unknown 94.8
2097 Female, age 72, unknown 90.3
Median raphe nucleus
nTPM: 73.7
2220 Male, age 76, midline 73.7
Pedunculopontine tegmental nucleus
nTPM: 114.0
2334 Male, age 80, both hemispheres 135.9
1921 Female, age 85, both hemispheres 108.2
2338 Male, age 61, both hemispheres 98.1
Periaquaductal grey, anterior
nTPM: 106.2
2502 Female, age 75, unknown 117.9
1947 Male, age 18, unknown 111.0
1795 Male, age 51, unknown 89.8
Periaquaductal grey, dorsal
nTPM: 77.2
2464 Female, age 72, unknown 119.0
1831 Male, age 72, unknown 72.7
2850 Male, age 76, both hemispheres 63.5
1840 Male, age 53, unknown 53.5
Periaquaductal grey, lateral
nTPM: 97.2
2272 Male, age 74, both hemispheres 116.5
2053 Male, age 18, unknown 90.9
2140 Male, age 76, both hemispheres 84.2
Pretectal area
nTPM: 107.4
2316 Male, age 76, right hemisphere 165.4
2667 Female, age 75, unknown 125.8
1815 Male, age 53, unknown 123.6
2407 Male, age 75, both hemispheres 120.5
1817 Female, age 42, unknown 107.7
2007 Male, age 72, unknown 107.7
2825 Male, age 18, unknown 102.1
2273 Male, age 74, both hemispheres 98.3
2224 Female, age 72, unknown 87.1
1944 Female, age 72, unknown 71.9
1816 Male, age 51, unknown 71.5
Red nucleus
nTPM: 182.2
2227 Male, age 72, unknown 209.8
1904 Male, age 53, unknown 209.5
2769 Male, age 72, unknown 209.4
2785 Male, age 18, unknown 206.4
1865 Male, age 51, unknown 200.7
2503 Female, age 72, unknown 195.3
2823 Male, age 76, right hemisphere 185.8
1821 Female, age 72, unknown 179.7
1954 Female, age 42, unknown 163.1
2588 Male, age 74, left hemisphere 162.2
2725 Female, age 75, unknown 132.6
2584 Male, age 75, left hemisphere 132.0
Substantia nigra
nTPM: 105.4
1851 Male, age 51, unknown 125.1
2590 Female, age 75, unknown 121.7
2583 Male, age 75, right hemisphere 121.5
2409 Female, age 72, unknown 117.1
1941 Male, age 53, unknown 107.0
1889 Female, age 72, unknown 106.3
2699 Male, age 18, unknown 101.1
2241 Male, age 72, unknown 86.3
1916 Female, age 42, unknown 84.0
2665 Male, age 74, both hemispheres 83.5
Superior colliculus
nTPM: 123.8
1995 Male, age 72, unknown 176.4
1913 Female, age 42, unknown 174.8
1895 Male, age 76, right hemisphere 147.7
1839 Male, age 51, unknown 134.3
2587 Male, age 74, left hemisphere 126.1
1796 Male, age 53, unknown 110.6
2668 Female, age 75, unknown 102.7
2261 Male, age 18, unknown 92.7
2664 Male, age 75, both hemispheres 87.6
2087 Female, age 72, unknown 84.8
Ventral tegmental area
nTPM: 117.3
2410 Female, age 72, unknown 155.8
2223 Female, age 72, unknown 125.5
2021 Male, age 53, unknown 110.8
1915 Female, age 42, unknown 110.2
1942 Male, age 51, unknown 107.8
2218 Male, age 76, both hemispheres 93.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.7
Samples: 139

Max nTPM: 370.4
Min nTPM: 35.8
Std nTPM: 45.2
Median nTPM: 73.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 370.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 242.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 207.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 192.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 184.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 179.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 173.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 173.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 171.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 160.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 153.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 509.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 509.4
FF:10158-103A5 76 years, female 509.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.0
Pig sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 32.5
Min nTPM: 16.6
Sample A Female 32.5
Sample B Female 21.9
Sample C Male 17.2
Sample D Male 16.6
Periaqueductal gray
nTPM: 19.7
Samples: 3

Max nTPM: 20.7
Min nTPM: 17.9
Sample B Female 20.5
Sample C Male 20.7
Sample D Male 17.9
Substantia nigra
nTPM: 27.0
Samples: 4

Max nTPM: 32.1
Min nTPM: 20.6
Sample A Female 24.5
Sample B Female 32.1
Sample C Male 20.6
Sample D Male 30.7
Superior colliculi
nTPM: 24.5
Samples: 4

Max nTPM: 29.8
Min nTPM: 19.5
Sample A Female 26.5
Sample B Female 29.8
Sample C Male 19.5
Sample D Male 22.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 26.1
Min nTPM: 23.6
Sample A Male 26.1
Sample B Male 23.6
Sample C Female 25.0
Sample D Female 23.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69527860 Antisense, RP_050421_02_F04, Mouse strain C57BL/6J (56 days, male) 1.2
74658032 Antisense, RP_060220_04_C05, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.