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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:14.9 nTPM
HPA:14.9 nTPM
GTEx:16.0 nTPM
FANTOM5:26.0 Scaled Tags Per Million
Pig:6.5 nTPM
Mouse:11.9 nTPM
Allen mouse:2.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005554Antibody CAB025183
Glial cells HighLow
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.9
Sample id Sample description nTPM
Hippocampus
nTPM: 13.9
2529 Female, age 94, left hemisphere 15.4
2148 Female, age 91, left hemisphere 14.3
1911 Female, age 85, right hemisphere 14.2
1898 Male, age 80, left hemisphere 13.4
1855 Male, age 76, left hemisphere 13.2
2621 Female, age 67, right hemisphere 13.2
Dentate gyrus
nTPM: 14.1
2530 Female, age 94, left hemisphere 17.5
2528 Male, age 74, both hemispheres 15.3
2010 Male, age 76, both hemispheres 13.7
2246 Female, age 85, both hemispheres 13.2
1927 Female, age 91, both hemispheres 13.1
2531 Female, age 67, both hemispheres 11.9
Entorhinal gyrus
nTPM: 14.5
2117 Female, age 91, right hemisphere 15.5
2613 Female, age 94, left hemisphere 15.2
2764 Male, age 80, right hemisphere 15.1
1787 Male, age 76, left hemisphere 14.1
1938 Female, age 85, left hemisphere 13.8
2686 Male, age 75, right hemisphere 13.2
Hippocampus, CA1
nTPM: 13.4
2082 Female, age 91, right hemisphere 14.7
1873 Female, age 85, both hemispheres 13.9
2527 Male, age 74, both hemispheres 13.6
2749 Male, age 80, left hemisphere 12.8
2045 Male, age 76, both hemispheres 12.2
Hippocampus, CA2
nTPM: 14.9
2249 Male, age 74, both hemispheres 16.9
1940 Female, age 85, left hemisphere 15.2
2437 Female, age 94, left hemisphere 15.1
1892 Male, age 76, both hemispheres 14.3
2113 Female, age 91, right hemisphere 13.9
1963 Male, age 80, left hemisphere 13.8
Hippocampus, CA3
nTPM: 13.7
2436 Male, age 74, both hemispheres 16.8
2620 Female, age 94, left hemisphere 13.8
1867 Male, age 76, both hemispheres 13.7
1891 Female, age 85, both hemispheres 13.5
2137 Male, age 80, left hemisphere 12.6
2861 Female, age 67, both hemispheres 12.0
Parahippocampal cortex
nTPM: 13.5
1990 Female, age 91, right hemisphere 14.3
2692 Male, age 74, both hemispheres 14.3
2622 Female, age 67, right hemisphere 13.9
1933 Female, age 85, both hemispheres 13.5
2018 Male, age 76, both hemispheres 13.4
2250 Female, age 67, right hemisphere 13.4
2245 Female, age 91, both hemispheres 13.2
2532 Female, age 72, left hemisphere 13.0
1850 Male, age 80, both hemispheres 12.9
2693 Female, age 94, both hemispheres 12.9
Perirhinal gyrus
nTPM: 13.0
1794 Male, age 80, right hemisphere 13.3
1841 Female, age 85, right hemisphere 13.1
1847 Female, age 91, left hemisphere 13.0
2521 Female, age 94, right hemisphere 13.0
2848 Male, age 76, right hemisphere 12.8
Subiculum
nTPM: 14.1
2619 Male, age 74, both hemispheres 15.0
2729 Female, age 91, right hemisphere 14.9
2042 Male, age 76, both hemispheres 14.8
1901 Male, age 80, both hemispheres 14.1
1977 Female, age 85, both hemispheres 13.5
2438 Female, age 94, left hemisphere 12.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.0
Samples: 197

Max nTPM: 29.9
Min nTPM: 5.3
Std nTPM: 3.8
Median nTPM: 16.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 29.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 28.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 26.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 24.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 24.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 23.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 23.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 22.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 21.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 21.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 21.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.0
FF:10153-102I9 76 years, female 33.1
FF:10169-103B7 60 years, female 18.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 6.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 6.4
Samples: 4

Max nTPM: 8.6
Min nTPM: 3.9
Sample A Female 8.5
Sample B Female 4.7
Sample C Male 8.6
Sample D Male 3.9
Entorhinal cortex
nTPM: 4.3
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.6
Sample A Female 5.2
Sample B Female 4.4
Sample C Male 4.1
Sample D Male 3.6
Subiculum
nTPM: 4.6
Samples: 4

Max nTPM: 4.8
Min nTPM: 4.2
Sample A Female 4.8
Sample B Female 4.2
Sample C Male 4.6
Sample D Male 4.8
Ventral hippocampus
nTPM: 5.4
Samples: 4

Max nTPM: 6.4
Min nTPM: 3.5
Sample A Female 5.1
Sample B Female 3.5
Sample C Male 6.4
Sample D Male 6.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 11.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 11.9
Samples: 4

Max nTPM: 14.3
Min nTPM: 10.1
Sample A Male 10.1
Sample B Male 10.5
Sample C Female 14.3
Sample D Female 12.5
Hippocampal formation
nTPM: 10.6
Samples: 4

Max nTPM: 11.4
Min nTPM: 9.5
Sample A Male 9.5
Sample B Male 10.4
Sample C Female 10.9
Sample D Female 11.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.3
71608220 Antisense, RP_050927_01_C04, Mouse strain C57BL/6J (56 days, male) 3.6
75749415 Antisense, RP_060518_01_B11, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.