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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:12.5 nTPM
HPA:12.5 nTPM
GTEx:12.2 nTPM
FANTOM5:16.1 Scaled Tags Per Million
Pig:27.9 nTPM
Mouse:34.4 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005839
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.5
Sample id Sample description nTPM
Hippocampus
nTPM: 4.2
2148 Female, age 91, left hemisphere 8.2
2621 Female, age 67, right hemisphere 8.2
2529 Female, age 94, left hemisphere 5.9
1911 Female, age 85, right hemisphere 3.2
1855 Male, age 76, left hemisphere 0.0
1898 Male, age 80, left hemisphere 0.0
Dentate gyrus
nTPM: 6.3
2531 Female, age 67, both hemispheres 14.8
1927 Female, age 91, both hemispheres 13.3
2246 Female, age 85, both hemispheres 6.9
2528 Male, age 74, both hemispheres 2.8
2010 Male, age 76, both hemispheres 0.0
2530 Female, age 94, left hemisphere 0.0
Entorhinal gyrus
nTPM: 8.9
2613 Female, age 94, left hemisphere 17.1
1938 Female, age 85, left hemisphere 9.9
2764 Male, age 80, right hemisphere 9.5
1787 Male, age 76, left hemisphere 9.3
2686 Male, age 75, right hemisphere 7.1
2117 Female, age 91, right hemisphere 0.5
Hippocampus, CA1
nTPM: 4.1
2082 Female, age 91, right hemisphere 6.9
2749 Male, age 80, left hemisphere 5.6
2527 Male, age 74, both hemispheres 4.5
2045 Male, age 76, both hemispheres 2.2
1873 Female, age 85, both hemispheres 1.5
Hippocampus, CA2
nTPM: 3.0
1892 Male, age 76, both hemispheres 8.9
2113 Female, age 91, right hemisphere 5.6
1963 Male, age 80, left hemisphere 2.1
2249 Male, age 74, both hemispheres 1.9
1940 Female, age 85, left hemisphere 0.0
2437 Female, age 94, left hemisphere 0.0
Hippocampus, CA3
nTPM: 10.0
2620 Female, age 94, left hemisphere 27.1
2861 Female, age 67, both hemispheres 14.3
2137 Male, age 80, left hemisphere 12.1
1867 Male, age 76, both hemispheres 4.4
2436 Male, age 74, both hemispheres 2.0
1891 Female, age 85, both hemispheres 0.0
Parahippocampal cortex
nTPM: 9.9
2693 Female, age 94, both hemispheres 16.9
2245 Female, age 91, both hemispheres 14.1
1933 Female, age 85, both hemispheres 13.5
2622 Female, age 67, right hemisphere 11.9
2532 Female, age 72, left hemisphere 10.6
1850 Male, age 80, both hemispheres 8.4
2692 Male, age 74, both hemispheres 7.9
2250 Female, age 67, right hemisphere 6.5
2018 Male, age 76, both hemispheres 4.7
1990 Female, age 91, right hemisphere 4.6
Perirhinal gyrus
nTPM: 12.5
2848 Male, age 76, right hemisphere 14.5
1794 Male, age 80, right hemisphere 13.3
1847 Female, age 91, left hemisphere 13.0
1841 Female, age 85, right hemisphere 11.2
2521 Female, age 94, right hemisphere 10.6
Subiculum
nTPM: 2.0
1977 Female, age 85, both hemispheres 6.4
2619 Male, age 74, both hemispheres 4.6
1901 Male, age 80, both hemispheres 1.3
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.2
Samples: 197

Max nTPM: 47.1
Min nTPM: 0.6
Std nTPM: 6.4
Median nTPM: 11.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 47.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 33.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 30.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 29.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 28.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 28.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 27.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 25.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 24.1
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 23.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 23.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.1
FF:10153-102I9 76 years, female 17.6
FF:10169-103B7 60 years, female 14.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 27.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.8
Samples: 4

Max nTPM: 26.7
Min nTPM: 13.7
Sample A Female 18.8
Sample B Female 26.7
Sample C Male 13.7
Sample D Male 20.0
Entorhinal cortex
nTPM: 27.9
Samples: 4

Max nTPM: 30.7
Min nTPM: 24.3
Sample A Female 30.7
Sample B Female 24.3
Sample C Male 29.3
Sample D Male 27.4
Subiculum
nTPM: 17.1
Samples: 4

Max nTPM: 20.4
Min nTPM: 12.5
Sample A Female 20.4
Sample B Female 15.7
Sample C Male 19.9
Sample D Male 12.5
Ventral hippocampus
nTPM: 16.2
Samples: 4

Max nTPM: 26.5
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 15.6
Sample C Male 19.1
Sample D Male 26.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 34.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.2
Samples: 4

Max nTPM: 33.6
Min nTPM: 26.7
Sample A Male 33.6
Sample B Male 29.2
Sample C Female 26.7
Sample D Female 27.4
Hippocampal formation
nTPM: 34.4
Samples: 4

Max nTPM: 40.8
Min nTPM: 27.3
Sample A Male 27.3
Sample B Male 37.0
Sample C Female 40.8
Sample D Female 32.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
71920507 Antisense, RP_050915_02_C05, Mouse strain C57BL/6J (56 days, male) 1.2
73636089 Antisense, RP_050915_02_C05, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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