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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:91.3 nTPM
HPA:91.3 nTPM
GTEx:83.0 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:73.5 nTPM
Mouse:131.7 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 91.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.1
2586 Male, age 75, left hemisphere 95.3
2019 Male, age 18, unknown 91.5
2828 Female, age 72, unknown 90.8
2666 Male, age 74, left hemisphere 89.7
2411 Female, age 72, unknown 89.4
1870 Female, age 42, unknown 88.7
1827 Male, age 72, unknown 88.3
1833 Male, age 53, unknown 86.7
2219 Male, age 76, both hemispheres 85.7
1830 Male, age 51, unknown 85.3
Dorsal raphe nucleus
nTPM: 90.0
1828 Male, age 53, unknown 92.1
2047 Male, age 72, unknown 91.1
2298 Female, age 72, unknown 90.4
2750 Male, age 76, both hemispheres 88.5
2016 Female, age 72, unknown 87.9
Inferior colliculus
nTPM: 87.9
1890 Male, age 53, unknown 89.4
2097 Female, age 72, unknown 88.7
1848 Female, age 42, unknown 88.3
2849 Male, age 72, unknown 85.2
Median raphe nucleus
nTPM: 89.9
2220 Male, age 76, midline 89.9
Pedunculopontine tegmental nucleus
nTPM: 89.1
1921 Female, age 85, both hemispheres 90.5
2334 Male, age 80, both hemispheres 89.4
2338 Male, age 61, both hemispheres 87.6
Periaquaductal grey, anterior
nTPM: 88.4
1947 Male, age 18, unknown 89.1
2502 Female, age 75, unknown 88.7
1795 Male, age 51, unknown 87.5
Periaquaductal grey, dorsal
nTPM: 86.2
2850 Male, age 76, both hemispheres 89.0
1840 Male, age 53, unknown 86.9
2464 Female, age 72, unknown 85.5
1831 Male, age 72, unknown 83.5
Periaquaductal grey, lateral
nTPM: 86.1
2140 Male, age 76, both hemispheres 86.8
2053 Male, age 18, unknown 86.1
2272 Male, age 74, both hemispheres 85.3
Pretectal area
nTPM: 89.3
1817 Female, age 42, unknown 93.6
1816 Male, age 51, unknown 93.5
2007 Male, age 72, unknown 92.4
2667 Female, age 75, unknown 92.0
1815 Male, age 53, unknown 90.7
1944 Female, age 72, unknown 90.4
2224 Female, age 72, unknown 87.1
2273 Male, age 74, both hemispheres 85.8
2825 Male, age 18, unknown 85.6
2316 Male, age 76, right hemisphere 85.3
2407 Male, age 75, both hemispheres 85.3
Red nucleus
nTPM: 89.8
1954 Female, age 42, unknown 92.9
1821 Female, age 72, unknown 91.4
2823 Male, age 76, right hemisphere 91.3
2503 Female, age 72, unknown 90.7
2588 Male, age 74, left hemisphere 90.6
1865 Male, age 51, unknown 90.2
2785 Male, age 18, unknown 89.5
2769 Male, age 72, unknown 89.4
1904 Male, age 53, unknown 89.3
2725 Female, age 75, unknown 88.9
2227 Male, age 72, unknown 88.8
2584 Male, age 75, left hemisphere 84.3
Substantia nigra
nTPM: 91.3
1916 Female, age 42, unknown 97.6
2241 Male, age 72, unknown 95.1
1851 Male, age 51, unknown 92.9
2665 Male, age 74, both hemispheres 92.7
1889 Female, age 72, unknown 91.6
2699 Male, age 18, unknown 91.5
1941 Male, age 53, unknown 90.3
2583 Male, age 75, right hemisphere 89.3
2590 Female, age 75, unknown 88.3
2409 Female, age 72, unknown 83.9
Superior colliculus
nTPM: 88.1
1796 Male, age 53, unknown 89.4
2587 Male, age 74, left hemisphere 88.8
2087 Female, age 72, unknown 88.6
2668 Female, age 75, unknown 88.6
2261 Male, age 18, unknown 88.4
1995 Male, age 72, unknown 88.2
1839 Male, age 51, unknown 88.0
2664 Male, age 75, both hemispheres 87.8
1895 Male, age 76, right hemisphere 86.7
1913 Female, age 42, unknown 86.1
Ventral tegmental area
nTPM: 89.9
2410 Female, age 72, unknown 93.1
1915 Female, age 42, unknown 92.7
2218 Male, age 76, both hemispheres 91.1
1942 Male, age 51, unknown 88.4
2223 Female, age 72, unknown 87.8
2021 Male, age 53, unknown 86.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.0
Samples: 139

Max nTPM: 157.7
Min nTPM: 50.2
Std nTPM: 16.2
Median nTPM: 80.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 157.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 135.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 124.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 122.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 113.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 113.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 111.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 110.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 110.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 109.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 106.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.5
FF:10158-103A5 76 years, female 68.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.5
Pig sample Sample description nTPM
Midbrain
nTPM: 68.5
Samples: 4

Max nTPM: 87.1
Min nTPM: 51.7
Sample A Female 87.1
Sample B Female 57.6
Sample C Male 77.6
Sample D Male 51.7
Periaqueductal gray
nTPM: 57.3
Samples: 3

Max nTPM: 66.8
Min nTPM: 50.7
Sample B Female 54.5
Sample C Male 66.8
Sample D Male 50.7
Substantia nigra
nTPM: 64.4
Samples: 4

Max nTPM: 85.4
Min nTPM: 48.8
Sample A Female 85.4
Sample B Female 48.8
Sample C Male 72.3
Sample D Male 51.1
Superior colliculi
nTPM: 73.5
Samples: 4

Max nTPM: 85.9
Min nTPM: 59.9
Sample A Female 83.8
Sample B Female 59.9
Sample C Male 85.9
Sample D Male 64.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 131.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 131.7
Samples: 4

Max nTPM: 141.5
Min nTPM: 127.0
Sample A Male 129.9
Sample B Male 127.0
Sample C Female 128.3
Sample D Female 141.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
70192153 Antisense, RP_050517_01_D03, Mouse strain C57BL/6J (56 days, male) 8.0
71670705 Antisense, RP_050517_01_D03, Mouse strain C57BL/6J (56 days, male) 6.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.