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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:87.9 nTPM
HPA:87.9 nTPM
GTEx:73.9 nTPM
FANTOM5:95.8 Scaled Tags Per Million
Pig:55.0 nTPM
Mouse:183.7 nTPM
Allen mouse:10.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000994Antibody CAB008681
Glial cells LowMedium
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 87.9
Sample id Sample description nTPM
Hippocampus
nTPM: 87.5
1898 Male, age 80, left hemisphere 90.5
2529 Female, age 94, left hemisphere 87.7
1855 Male, age 76, left hemisphere 87.1
2621 Female, age 67, right hemisphere 87.0
2148 Female, age 91, left hemisphere 86.7
1911 Female, age 85, right hemisphere 86.0
Dentate gyrus
nTPM: 85.6
2528 Male, age 74, both hemispheres 87.6
2530 Female, age 94, left hemisphere 87.0
1927 Female, age 91, both hemispheres 86.1
2010 Male, age 76, both hemispheres 85.7
2246 Female, age 85, both hemispheres 85.0
2531 Female, age 67, both hemispheres 82.1
Entorhinal gyrus
nTPM: 87.9
1938 Female, age 85, left hemisphere 89.6
2764 Male, age 80, right hemisphere 89.1
2117 Female, age 91, right hemisphere 88.8
2686 Male, age 75, right hemisphere 87.5
1787 Male, age 76, left hemisphere 87.3
2613 Female, age 94, left hemisphere 85.1
Hippocampus, CA1
nTPM: 87.2
2749 Male, age 80, left hemisphere 93.1
2527 Male, age 74, both hemispheres 89.0
1873 Female, age 85, both hemispheres 86.2
2045 Male, age 76, both hemispheres 83.9
2082 Female, age 91, right hemisphere 83.9
Hippocampus, CA2
nTPM: 86.5
1963 Male, age 80, left hemisphere 90.8
1892 Male, age 76, both hemispheres 88.4
2249 Male, age 74, both hemispheres 86.5
2437 Female, age 94, left hemisphere 85.6
2113 Female, age 91, right hemisphere 84.1
1940 Female, age 85, left hemisphere 83.4
Hippocampus, CA3
nTPM: 86.5
2436 Male, age 74, both hemispheres 90.2
2137 Male, age 80, left hemisphere 87.8
2861 Female, age 67, both hemispheres 85.9
1867 Male, age 76, both hemispheres 85.6
1891 Female, age 85, both hemispheres 85.1
2620 Female, age 94, left hemisphere 84.3
Parahippocampal cortex
nTPM: 86.6
2692 Male, age 74, both hemispheres 89.2
1850 Male, age 80, both hemispheres 89.0
2622 Female, age 67, right hemisphere 87.9
2250 Female, age 67, right hemisphere 87.7
1933 Female, age 85, both hemispheres 87.6
1990 Female, age 91, right hemisphere 87.0
2245 Female, age 91, both hemispheres 86.0
2018 Male, age 76, both hemispheres 85.1
2532 Female, age 72, left hemisphere 84.6
2693 Female, age 94, both hemispheres 82.0
Perirhinal gyrus
nTPM: 86.4
1847 Female, age 91, left hemisphere 90.0
1794 Male, age 80, right hemisphere 88.9
1841 Female, age 85, right hemisphere 84.8
2848 Male, age 76, right hemisphere 84.6
2521 Female, age 94, right hemisphere 83.7
Subiculum
nTPM: 86.0
2619 Male, age 74, both hemispheres 89.6
1901 Male, age 80, both hemispheres 87.5
2042 Male, age 76, both hemispheres 86.1
1977 Female, age 85, both hemispheres 85.9
2729 Female, age 91, right hemisphere 84.3
2438 Female, age 94, left hemisphere 82.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 73.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 73.9
Samples: 197

Max nTPM: 132.4
Min nTPM: 43.1
Std nTPM: 13.7
Median nTPM: 72.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 132.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 130.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 118.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 109.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 102.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 102.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 102.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 101.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 99.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 97.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 97.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 95.8
FF:10169-103B7 60 years, female 108.8
FF:10153-102I9 76 years, female 82.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 55.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 55.1
Samples: 4

Max nTPM: 72.7
Min nTPM: 40.6
Sample A Female 72.7
Sample B Female 48.3
Sample C Male 58.6
Sample D Male 40.6
Entorhinal cortex
nTPM: 46.5
Samples: 4

Max nTPM: 54.9
Min nTPM: 36.8
Sample A Female 46.3
Sample B Female 48.1
Sample C Male 54.9
Sample D Male 36.8
Subiculum
nTPM: 50.2
Samples: 4

Max nTPM: 63.8
Min nTPM: 40.9
Sample A Female 63.8
Sample B Female 45.6
Sample C Male 50.4
Sample D Male 40.9
Ventral hippocampus
nTPM: 53.8
Samples: 4

Max nTPM: 70.3
Min nTPM: 37.9
Sample A Female 57.2
Sample B Female 37.9
Sample C Male 70.3
Sample D Male 49.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 183.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 183.7
Samples: 4

Max nTPM: 193.7
Min nTPM: 175.7
Sample A Male 175.7
Sample B Male 181.1
Sample C Female 193.7
Sample D Female 184.2
Hippocampal formation
nTPM: 181.3
Samples: 4

Max nTPM: 190.1
Min nTPM: 164.2
Sample A Male 182.3
Sample B Male 164.2
Sample C Female 188.4
Sample D Female 190.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.7
71670705 Antisense, RP_050517_01_D03, Mouse strain C57BL/6J (56 days, male) 10.7
70192153 Antisense, RP_050517_01_D03, Mouse strain C57BL/6J (56 days, male) 10.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.