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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.8 nTPM
HPA:51.8 nTPM
GTEx:47.4 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:1.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.0
2411 Female, age 72, unknown 53.3
2019 Male, age 18, unknown 52.2
1830 Male, age 51, unknown 51.5
1833 Male, age 53, unknown 42.0
1870 Female, age 42, unknown 41.1
2586 Male, age 75, left hemisphere 40.4
2828 Female, age 72, unknown 35.4
2219 Male, age 76, both hemispheres 29.4
2666 Male, age 74, left hemisphere 28.6
1827 Male, age 72, unknown 26.1
Dorsal raphe nucleus
nTPM: 28.9
2750 Male, age 76, both hemispheres 51.1
2016 Female, age 72, unknown 28.7
1828 Male, age 53, unknown 28.3
2047 Male, age 72, unknown 20.6
2298 Female, age 72, unknown 16.0
Inferior colliculus
nTPM: 24.6
1890 Male, age 53, unknown 27.9
1848 Female, age 42, unknown 26.5
2849 Male, age 72, unknown 24.1
2097 Female, age 72, unknown 19.9
Median raphe nucleus
nTPM: 25.6
2220 Male, age 76, midline 25.6
Pedunculopontine tegmental nucleus
nTPM: 33.5
2334 Male, age 80, both hemispheres 34.5
2338 Male, age 61, both hemispheres 34.3
1921 Female, age 85, both hemispheres 31.8
Periaquaductal grey, anterior
nTPM: 24.9
2502 Female, age 75, unknown 30.2
1947 Male, age 18, unknown 23.1
1795 Male, age 51, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 19.8
2464 Female, age 72, unknown 30.7
1831 Male, age 72, unknown 20.9
2850 Male, age 76, both hemispheres 14.8
1840 Male, age 53, unknown 12.9
Periaquaductal grey, lateral
nTPM: 22.5
2272 Male, age 74, both hemispheres 27.2
2053 Male, age 18, unknown 24.9
2140 Male, age 76, both hemispheres 15.3
Pretectal area
nTPM: 25.6
2316 Male, age 76, right hemisphere 35.4
2407 Male, age 75, both hemispheres 34.2
1815 Male, age 53, unknown 31.7
2667 Female, age 75, unknown 27.8
2007 Male, age 72, unknown 27.3
2825 Male, age 18, unknown 25.6
2273 Male, age 74, both hemispheres 25.1
1817 Female, age 42, unknown 22.7
2224 Female, age 72, unknown 21.6
1944 Female, age 72, unknown 15.4
1816 Male, age 51, unknown 15.3
Red nucleus
nTPM: 51.8
2769 Male, age 72, unknown 60.7
2227 Male, age 72, unknown 60.6
1821 Female, age 72, unknown 57.0
1865 Male, age 51, unknown 56.7
2823 Male, age 76, right hemisphere 56.5
1904 Male, age 53, unknown 54.2
2785 Male, age 18, unknown 52.5
2584 Male, age 75, left hemisphere 50.6
2588 Male, age 74, left hemisphere 50.6
2503 Female, age 72, unknown 50.2
1954 Female, age 42, unknown 38.9
2725 Female, age 75, unknown 33.0
Substantia nigra
nTPM: 28.7
2583 Male, age 75, right hemisphere 44.6
1851 Male, age 51, unknown 34.7
2409 Female, age 72, unknown 32.5
2590 Female, age 75, unknown 30.3
1889 Female, age 72, unknown 29.2
1941 Male, age 53, unknown 28.7
2699 Male, age 18, unknown 27.5
1916 Female, age 42, unknown 20.2
2665 Male, age 74, both hemispheres 19.9
2241 Male, age 72, unknown 19.2
Superior colliculus
nTPM: 32.4
1913 Female, age 42, unknown 51.9
1995 Male, age 72, unknown 50.4
1895 Male, age 76, right hemisphere 35.6
1839 Male, age 51, unknown 33.9
2587 Male, age 74, left hemisphere 31.8
2668 Female, age 75, unknown 31.4
1796 Male, age 53, unknown 24.6
2664 Male, age 75, both hemispheres 23.8
2087 Female, age 72, unknown 20.6
2261 Male, age 18, unknown 20.3
Ventral tegmental area
nTPM: 35.8
2223 Female, age 72, unknown 56.4
2410 Female, age 72, unknown 39.6
2021 Male, age 53, unknown 34.0
1942 Male, age 51, unknown 32.2
2218 Male, age 76, both hemispheres 27.9
1915 Female, age 42, unknown 24.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.4
Samples: 139

Max nTPM: 192.8
Min nTPM: 10.1
Std nTPM: 28.4
Median nTPM: 42.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 192.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 151.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 147.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 136.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 109.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 105.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 104.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 95.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 93.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 92.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 89.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.7
FF:10158-103A5 76 years, female 37.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.7
Pig sample Sample description nTPM
Midbrain
nTPM: 2.1
Samples: 4

Max nTPM: 4.2
Min nTPM: 1.0
Sample A Female 4.2
Sample B Female 1.6
Sample C Male 1.7
Sample D Male 1.0
Periaqueductal gray
nTPM: 3.7
Samples: 3

Max nTPM: 5.3
Min nTPM: 2.3
Sample B Female 2.3
Sample C Male 5.3
Sample D Male 3.5
Substantia nigra
nTPM: 1.9
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.4
Sample A Female 2.4
Sample B Female 1.4
Sample C Male 1.6
Sample D Male 2.1
Superior colliculi
nTPM: 1.5
Samples: 4

Max nTPM: 2.2
Min nTPM: 0.6
Sample A Female 2.2
Sample B Female 0.6
Sample C Male 1.6
Sample D Male 1.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.8
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.3
Sample A Male 2.8
Sample B Male 1.4
Sample C Female 1.3
Sample D Female 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.