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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.6 nTPM
HPA:45.6 nTPM
GTEx:39.2 nTPM
FANTOM5:168.8 Scaled Tags Per Million
Pig:57.4 nTPM
Mouse:104.9 nTPM
Allen mouse:5.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 45.6
Sample id Sample description nTPM
Hippocampus
nTPM: 31.7
2148 Female, age 91, left hemisphere 49.2
2621 Female, age 67, right hemisphere 38.1
1911 Female, age 85, right hemisphere 30.7
1855 Male, age 76, left hemisphere 30.3
1898 Male, age 80, left hemisphere 21.9
2529 Female, age 94, left hemisphere 19.9
Dentate gyrus
nTPM: 36.4
2531 Female, age 67, both hemispheres 62.8
1927 Female, age 91, both hemispheres 49.0
2528 Male, age 74, both hemispheres 32.5
2246 Female, age 85, both hemispheres 29.7
2010 Male, age 76, both hemispheres 26.1
2530 Female, age 94, left hemisphere 18.1
Entorhinal gyrus
nTPM: 31.7
2613 Female, age 94, left hemisphere 45.3
2686 Male, age 75, right hemisphere 40.9
2764 Male, age 80, right hemisphere 29.2
1938 Female, age 85, left hemisphere 26.0
2117 Female, age 91, right hemisphere 24.4
1787 Male, age 76, left hemisphere 24.2
Hippocampus, CA1
nTPM: 45.6
2749 Male, age 80, left hemisphere 65.2
2045 Male, age 76, both hemispheres 59.3
2527 Male, age 74, both hemispheres 41.5
1873 Female, age 85, both hemispheres 35.1
2082 Female, age 91, right hemisphere 27.0
Hippocampus, CA2
nTPM: 26.7
1963 Male, age 80, left hemisphere 29.3
2249 Male, age 74, both hemispheres 29.3
1892 Male, age 76, both hemispheres 27.2
2113 Female, age 91, right hemisphere 27.2
2437 Female, age 94, left hemisphere 25.2
1940 Female, age 85, left hemisphere 22.0
Hippocampus, CA3
nTPM: 41.0
2137 Male, age 80, left hemisphere 61.3
2861 Female, age 67, both hemispheres 49.6
2620 Female, age 94, left hemisphere 48.1
1867 Male, age 76, both hemispheres 37.6
1891 Female, age 85, both hemispheres 26.2
2436 Male, age 74, both hemispheres 23.0
Parahippocampal cortex
nTPM: 35.1
2622 Female, age 67, right hemisphere 48.5
2693 Female, age 94, both hemispheres 43.7
2245 Female, age 91, both hemispheres 38.8
2250 Female, age 67, right hemisphere 37.9
2532 Female, age 72, left hemisphere 37.1
1933 Female, age 85, both hemispheres 33.4
1990 Female, age 91, right hemisphere 30.4
2692 Male, age 74, both hemispheres 30.0
1850 Male, age 80, both hemispheres 29.6
2018 Male, age 76, both hemispheres 21.7
Perirhinal gyrus
nTPM: 35.4
2521 Female, age 94, right hemisphere 45.9
1847 Female, age 91, left hemisphere 38.3
1841 Female, age 85, right hemisphere 37.4
1794 Male, age 80, right hemisphere 32.1
2848 Male, age 76, right hemisphere 23.6
Subiculum
nTPM: 28.2
2729 Female, age 91, right hemisphere 38.7
1901 Male, age 80, both hemispheres 32.0
2619 Male, age 74, both hemispheres 30.3
1977 Female, age 85, both hemispheres 25.1
2438 Female, age 94, left hemisphere 24.3
2042 Male, age 76, both hemispheres 18.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 39.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.2
Samples: 197

Max nTPM: 72.9
Min nTPM: 18.7
Std nTPM: 11.0
Median nTPM: 37.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 72.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 70.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 69.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 68.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 68.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 67.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 67.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 63.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 63.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 61.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 60.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 168.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 168.8
FF:10169-103B7 60 years, female 175.7
FF:10153-102I9 76 years, female 161.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 57.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 47.0
Samples: 4

Max nTPM: 68.4
Min nTPM: 32.6
Sample A Female 43.1
Sample B Female 43.7
Sample C Male 32.6
Sample D Male 68.4
Entorhinal cortex
nTPM: 57.4
Samples: 4

Max nTPM: 66.9
Min nTPM: 48.6
Sample A Female 53.0
Sample B Female 61.2
Sample C Male 48.6
Sample D Male 66.9
Subiculum
nTPM: 44.5
Samples: 4

Max nTPM: 55.2
Min nTPM: 38.7
Sample A Female 55.2
Sample B Female 43.7
Sample C Male 38.7
Sample D Male 40.4
Ventral hippocampus
nTPM: 40.9
Samples: 4

Max nTPM: 49.2
Min nTPM: 34.2
Sample A Female 34.2
Sample B Female 39.2
Sample C Male 40.8
Sample D Male 49.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 104.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 104.9
Samples: 4

Max nTPM: 125.8
Min nTPM: 95.9
Sample A Male 95.9
Sample B Male 100.3
Sample C Female 97.7
Sample D Female 125.8
Hippocampal formation
nTPM: 94.4
Samples: 4

Max nTPM: 104.3
Min nTPM: 86.8
Sample A Male 89.6
Sample B Male 104.3
Sample C Female 96.9
Sample D Female 86.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.1
1074 Antisense, RP_Baylor_103312, Mouse strain C57BL/6J (56 days, male) 10.3
1075 Antisense, RP_Baylor_103312, Mouse strain C57BL/6J (56 days, male) 7.1
1076 Sense, RPS_Baylor_37107, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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