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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.6 nTPM
HPA:39.6 nTPM
GTEx:43.1 nTPM
FANTOM5:174.3 Scaled Tags Per Million
Pig:36.0 nTPM
Mouse:88.3 nTPM
Allen mouse:4.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 22.5
1781 Male, age 74, unknown 26.8
2290 Female, age 72, unknown 25.5
1854 Male, age 80, left hemisphere 24.3
1857 Female, age 85, left hemisphere 23.3
2289 Male, age 61, right hemisphere 22.3
2288 Male, age 75, left hemisphere 20.9
2481 Female, age 94, left hemisphere 18.9
2846 Female, age 79, unknown 17.8
Claustrum
nTPM: 31.7
2645 Female, age 72, unknown 41.9
2284 Female, age 91, both hemispheres 36.6
2568 Male, age 61, both hemispheres 34.7
2491 Male, age 75, both hemispheres 33.8
1956 Male, age 74, unknown 31.3
2392 Female, age 94, both hemispheres 30.1
2198 Male, age 80, both hemispheres 26.8
2292 Female, age 85, both hemispheres 26.5
2196 Female, age 79, unknown 23.2
Globus pallidus, externus
nTPM: 11.1
2646 Male, age 61, right hemisphere 18.3
2567 Female, age 72, unknown 13.7
1996 Male, age 80, right hemisphere 11.4
2395 Male, age 75, both hemispheres 6.6
2772 Female, age 79, unknown 5.7
Globus pallidus, internus
nTPM: 10.3
2287 Male, age 75, right hemisphere 14.1
2566 Female, age 72, unknown 13.4
1818 Male, age 74, unknown 12.9
2483 Female, age 94, right hemisphere 10.6
2037 Male, age 80, right hemisphere 9.4
2111 Female, age 85, right hemisphere 6.9
2778 Female, age 91, both hemispheres 5.0
Nucleus accumbens
nTPM: 22.0
1806 Female, age 85, left hemisphere 26.4
2824 Male, age 61, right hemisphere 24.6
1856 Female, age 91, right hemisphere 24.5
2286 Male, age 75, left hemisphere 23.1
1783 Male, age 74, unknown 22.8
2698 Female, age 72, unknown 20.2
2732 Male, age 80, right hemisphere 19.2
2391 Female, age 94, left hemisphere 15.1
Nucleus basalis of Meynert
nTPM: 13.3
2569 Male, age 61, both hemispheres 18.3
2484 Female, age 94, left hemisphere 14.8
2393 Male, age 80, right hemisphere 13.8
2821 Male, age 75, both hemispheres 6.4
Nucleus of the diagonal band
nTPM: 30.6
2029 Male, age 61, right hemisphere 38.0
2195 Female, age 85, both hemispheres 34.2
2775 Male, age 80, right hemisphere 32.3
1812 Female, age 91, both hemispheres 24.6
1979 Male, age 74, unknown 24.1
Olfactory tubercle
nTPM: 39.6
2487 Female, age 94, left hemisphere 47.0
2856 Male, age 75, right hemisphere 43.6
1998 Female, age 91, both hemispheres 39.2
1846 Male, age 80, right hemisphere 28.6
Putamen
nTPM: 18.9
1838 Male, age 80, right hemisphere 22.1
2466 Female, age 79, unknown 21.8
1829 Male, age 74, unknown 21.7
2489 Female, age 72, unknown 21.1
1937 Female, age 91, right hemisphere 19.2
2482 Female, age 94, left hemisphere 15.7
2647 Male, age 75, left hemisphere 10.5
Septal nuclei
nTPM: 31.3
1960 Male, age 74, unknown 38.8
2031 Female, age 72, unknown 38.1
2629 Female, age 94, right hemisphere 35.8
2059 Female, age 85, both hemispheres 34.3
2009 Female, age 91, both hemispheres 32.2
2199 Male, age 80, right hemisphere 20.0
2394 Male, age 61, left hemisphere 19.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.7
Samples: 246

Max nTPM: 64.0
Min nTPM: 18.9
Std nTPM: 7.5
Median nTPM: 38.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 64.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 60.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 59.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 57.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 56.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 55.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 54.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 54.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 53.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 53.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 52.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 43.1
Samples: 246

Max nTPM: 71.5
Min nTPM: 19.4
Std nTPM: 9.0
Median nTPM: 42.7
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 71.5
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 71.5
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 70.9
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 67.5
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 64.5
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 64.0
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 61.5
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 61.5
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 60.8
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 60.2
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 59.9
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Brain - Putamen (basal ganglia)
Average nTPM: 36.6
Samples: 205

Max nTPM: 71.4
Min nTPM: 19.9
Std nTPM: 7.0
Median nTPM: 36.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 71.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 65.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 64.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 54.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 52.8
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 52.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 50.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 48.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 48.1
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 47.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 47.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 174.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 158.3
FF:10164-103B2 76 years, female 158.3
Globus pallidus
Scaled Tags Per Million: 106.1
FF:10175-103C4 60 years, female 119.9
FF:10161-103A8 76 years, female 92.3
Nucleus accumbens
Scaled Tags Per Million: 174.3
FF:10037-101F1 23-56 years, mixed 174.3
Putamen
Scaled Tags Per Million: 156.5
FF:10176-103C5 60 years, female 156.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 36.0
Pig sample Sample description nTPM
Caudate
nTPM: 30.7
Samples: 4

Max nTPM: 33.1
Min nTPM: 26.3
Sample A Female 26.3
Sample B Female 31.1
Sample C Male 32.1
Sample D Male 33.1
Putamen
nTPM: 36.0
Samples: 4

Max nTPM: 40.8
Min nTPM: 28.8
Sample A Female 28.8
Sample B Female 39.0
Sample C Male 40.8
Sample D Male 35.3
Septum
nTPM: 28.4
Samples: 4

Max nTPM: 33.4
Min nTPM: 21.9
Sample A Female 27.0
Sample B Female 31.2
Sample C Male 21.9
Sample D Male 33.4
Ventral pallidum
nTPM: 30.6
Samples: 4

Max nTPM: 36.9
Min nTPM: 25.6
Sample A Female 29.7
Sample B Female 36.9
Sample C Male 30.3
Sample D Male 25.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 88.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 76.8
Samples: 4

Max nTPM: 94.3
Min nTPM: 59.8
Sample A Male 59.8
Sample B Male 71.9
Sample C Female 94.3
Sample D Female 81.0
Septum
nTPM: 59.2
Samples: 4

Max nTPM: 61.3
Min nTPM: 54.1
Sample A Male 60.7
Sample B Male 60.7
Sample C Female 54.1
Sample D Female 61.3
Ventral forebrain
nTPM: 88.3
Samples: 4

Max nTPM: 100.4
Min nTPM: 79.2
Sample A Male 91.1
Sample B Male 79.2
Sample C Female 82.4
Sample D Female 100.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.4
1074 Antisense, RP_Baylor_103312, Mouse strain C57BL/6J (56 days, male) 8.8
1075 Antisense, RP_Baylor_103312, Mouse strain C57BL/6J (56 days, male) 4.6
1076 Sense, RPS_Baylor_37107, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 1.3
1074 Antisense, RP_Baylor_103312, Mouse strain C57BL/6J (56 days, male) 2.6
1075 Antisense, RP_Baylor_103312, Mouse strain C57BL/6J (56 days, male) 1.2
1076 Sense, RPS_Baylor_37107, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.