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CNIH1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:42.8 nTPM
HPA:42.8 nTPM
GTEx:37.5 nTPM
FANTOM5:57.8 Scaled Tags Per Million
Pig:30.8 nTPM
Mouse:106.5 nTPM
Allen mouse:8.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002544
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.8
Sample id Sample description nTPM
Hippocampus
nTPM: 38.8
1898 Male, age 80, left hemisphere 41.6
1855 Male, age 76, left hemisphere 41.5
1911 Female, age 85, right hemisphere 40.6
2621 Female, age 67, right hemisphere 36.8
2148 Female, age 91, left hemisphere 36.5
2529 Female, age 94, left hemisphere 36.1
Dentate gyrus
nTPM: 39.6
2010 Male, age 76, both hemispheres 42.0
2528 Male, age 74, both hemispheres 41.3
1927 Female, age 91, both hemispheres 41.0
2246 Female, age 85, both hemispheres 40.8
2530 Female, age 94, left hemisphere 37.6
2531 Female, age 67, both hemispheres 35.1
Entorhinal gyrus
nTPM: 37.2
1938 Female, age 85, left hemisphere 39.0
2117 Female, age 91, right hemisphere 37.9
1787 Male, age 76, left hemisphere 37.6
2764 Male, age 80, right hemisphere 37.6
2686 Male, age 75, right hemisphere 36.3
2613 Female, age 94, left hemisphere 34.7
Hippocampus, CA1
nTPM: 40.5
2045 Male, age 76, both hemispheres 43.4
2749 Male, age 80, left hemisphere 42.6
1873 Female, age 85, both hemispheres 40.8
2527 Male, age 74, both hemispheres 38.4
2082 Female, age 91, right hemisphere 37.2
Hippocampus, CA2
nTPM: 39.0
1892 Male, age 76, both hemispheres 43.6
2249 Male, age 74, both hemispheres 42.8
2437 Female, age 94, left hemisphere 37.7
2113 Female, age 91, right hemisphere 36.8
1963 Male, age 80, left hemisphere 36.5
1940 Female, age 85, left hemisphere 36.4
Hippocampus, CA3
nTPM: 39.9
2436 Male, age 74, both hemispheres 45.0
1867 Male, age 76, both hemispheres 42.4
2620 Female, age 94, left hemisphere 40.6
1891 Female, age 85, both hemispheres 39.5
2137 Male, age 80, left hemisphere 38.5
2861 Female, age 67, both hemispheres 33.1
Parahippocampal cortex
nTPM: 39.4
1850 Male, age 80, both hemispheres 44.8
2693 Female, age 94, both hemispheres 41.2
2018 Male, age 76, both hemispheres 40.2
1933 Female, age 85, both hemispheres 39.7
1990 Female, age 91, right hemisphere 39.6
2532 Female, age 72, left hemisphere 38.9
2245 Female, age 91, both hemispheres 37.9
2250 Female, age 67, right hemisphere 37.6
2622 Female, age 67, right hemisphere 37.3
2692 Male, age 74, both hemispheres 37.0
Perirhinal gyrus
nTPM: 42.8
1794 Male, age 80, right hemisphere 45.8
1847 Female, age 91, left hemisphere 45.7
2521 Female, age 94, right hemisphere 42.1
1841 Female, age 85, right hemisphere 41.3
2848 Male, age 76, right hemisphere 39.3
Subiculum
nTPM: 38.1
2619 Male, age 74, both hemispheres 40.9
1901 Male, age 80, both hemispheres 38.7
2729 Female, age 91, right hemisphere 38.6
1977 Female, age 85, both hemispheres 38.1
2042 Male, age 76, both hemispheres 37.5
2438 Female, age 94, left hemisphere 34.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 37.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.5
Samples: 197

Max nTPM: 78.4
Min nTPM: 18.0
Std nTPM: 8.7
Median nTPM: 36.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 78.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 73.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 69.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 64.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 62.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 60.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 58.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 57.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 56.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 54.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 54.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 57.8
FF:10153-102I9 76 years, female 62.2
FF:10169-103B7 60 years, female 53.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 30.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.8
Samples: 4

Max nTPM: 37.1
Min nTPM: 21.8
Sample A Female 37.1
Sample B Female 29.5
Sample C Male 34.7
Sample D Male 21.8
Entorhinal cortex
nTPM: 24.8
Samples: 4

Max nTPM: 29.7
Min nTPM: 21.7
Sample A Female 22.8
Sample B Female 29.7
Sample C Male 25.0
Sample D Male 21.7
Subiculum
nTPM: 23.8
Samples: 4

Max nTPM: 27.3
Min nTPM: 21.5
Sample A Female 27.3
Sample B Female 22.9
Sample C Male 21.5
Sample D Male 23.3
Ventral hippocampus
nTPM: 25.1
Samples: 4

Max nTPM: 27.5
Min nTPM: 23.1
Sample A Female 27.5
Sample B Female 23.1
Sample C Male 23.3
Sample D Male 26.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 106.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 98.2
Samples: 4

Max nTPM: 104.6
Min nTPM: 92.2
Sample A Male 100.0
Sample B Male 104.6
Sample C Female 96.0
Sample D Female 92.2
Hippocampal formation
nTPM: 106.6
Samples: 4

Max nTPM: 117.4
Min nTPM: 95.3
Sample A Male 117.4
Sample B Male 95.3
Sample C Female 99.9
Sample D Female 113.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.7
279 Antisense, RP_Baylor_253892, Mouse strain C57BL/6J (56 days, male) 8.7
278 Antisense, RP_Baylor_253892, Mouse strain C57BL/6J (56 days, male) 5.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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