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VTI1B
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:56.6 nTPM
HPA:56.6 nTPM
GTEx:68.9 nTPM
FANTOM5:115.3 Scaled Tags Per Million
Pig:15.0 nTPM
Mouse:103.3 nTPM
Allen mouse:12.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA044121Antibody HPA060118
Glial cells Not detectedNot detected
Neuronal cells HighHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 56.6
Sample id Sample description nTPM
Hippocampus
nTPM: 54.9
1898 Male, age 80, left hemisphere 57.6
2148 Female, age 91, left hemisphere 55.1
2529 Female, age 94, left hemisphere 54.8
1911 Female, age 85, right hemisphere 54.4
2621 Female, age 67, right hemisphere 53.8
1855 Male, age 76, left hemisphere 53.7
Dentate gyrus
nTPM: 54.0
2010 Male, age 76, both hemispheres 56.2
2246 Female, age 85, both hemispheres 55.4
1927 Female, age 91, both hemispheres 54.6
2530 Female, age 94, left hemisphere 52.9
2531 Female, age 67, both hemispheres 52.6
2528 Male, age 74, both hemispheres 52.1
Entorhinal gyrus
nTPM: 54.5
1938 Female, age 85, left hemisphere 56.2
1787 Male, age 76, left hemisphere 55.8
2117 Female, age 91, right hemisphere 55.0
2686 Male, age 75, right hemisphere 54.8
2764 Male, age 80, right hemisphere 53.1
2613 Female, age 94, left hemisphere 51.9
Hippocampus, CA1
nTPM: 55.8
2749 Male, age 80, left hemisphere 58.7
2045 Male, age 76, both hemispheres 56.5
1873 Female, age 85, both hemispheres 55.5
2527 Male, age 74, both hemispheres 54.8
2082 Female, age 91, right hemisphere 53.5
Hippocampus, CA2
nTPM: 54.4
1892 Male, age 76, both hemispheres 59.1
1963 Male, age 80, left hemisphere 54.8
1940 Female, age 85, left hemisphere 54.4
2437 Female, age 94, left hemisphere 53.3
2113 Female, age 91, right hemisphere 53.2
2249 Male, age 74, both hemispheres 51.7
Hippocampus, CA3
nTPM: 55.3
2137 Male, age 80, left hemisphere 58.9
1867 Male, age 76, both hemispheres 58.2
1891 Female, age 85, both hemispheres 55.6
2620 Female, age 94, left hemisphere 54.9
2861 Female, age 67, both hemispheres 52.4
2436 Male, age 74, both hemispheres 51.9
Parahippocampal cortex
nTPM: 54.5
1850 Male, age 80, both hemispheres 58.7
2693 Female, age 94, both hemispheres 55.2
2532 Female, age 72, left hemisphere 54.9
1933 Female, age 85, both hemispheres 54.7
2692 Male, age 74, both hemispheres 54.3
1990 Female, age 91, right hemisphere 54.1
2245 Female, age 91, both hemispheres 53.4
2250 Female, age 67, right hemisphere 53.4
2622 Female, age 67, right hemisphere 53.1
2018 Male, age 76, both hemispheres 52.8
Perirhinal gyrus
nTPM: 56.6
1847 Female, age 91, left hemisphere 58.9
2848 Male, age 76, right hemisphere 58.3
1794 Male, age 80, right hemisphere 56.2
1841 Female, age 85, right hemisphere 55.9
2521 Female, age 94, right hemisphere 53.7
Subiculum
nTPM: 54.9
1901 Male, age 80, both hemispheres 56.4
2438 Female, age 94, left hemisphere 56.0
1977 Female, age 85, both hemispheres 54.5
2619 Male, age 74, both hemispheres 54.5
2042 Male, age 76, both hemispheres 54.1
2729 Female, age 91, right hemisphere 53.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 68.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 68.9
Samples: 197

Max nTPM: 172.9
Min nTPM: 18.7
Std nTPM: 21.8
Median nTPM: 64.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 172.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 141.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 125.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 123.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 121.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 118.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 115.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 113.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 112.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 111.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 111.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 115.3
FF:10169-103B7 60 years, female 127.6
FF:10153-102I9 76 years, female 103.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 13.9
Samples: 4

Max nTPM: 16.6
Min nTPM: 12.9
Sample A Female 16.6
Sample B Female 13.1
Sample C Male 12.9
Sample D Male 12.9
Entorhinal cortex
nTPM: 14.8
Samples: 4

Max nTPM: 15.0
Min nTPM: 14.5
Sample A Female 14.8
Sample B Female 15.0
Sample C Male 14.5
Sample D Male 14.8
Subiculum
nTPM: 15.0
Samples: 4

Max nTPM: 20.9
Min nTPM: 12.6
Sample A Female 20.9
Sample B Female 13.5
Sample C Male 12.6
Sample D Male 12.9
Ventral hippocampus
nTPM: 13.6
Samples: 4

Max nTPM: 14.9
Min nTPM: 12.5
Sample A Female 14.9
Sample B Female 12.5
Sample C Male 13.4
Sample D Male 13.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 103.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 103.3
Samples: 4

Max nTPM: 113.5
Min nTPM: 92.5
Sample A Male 98.9
Sample B Male 108.3
Sample C Female 92.5
Sample D Female 113.5
Hippocampal formation
nTPM: 86.4
Samples: 4

Max nTPM: 108.6
Min nTPM: 74.5
Sample A Male 108.6
Sample B Male 81.3
Sample C Female 81.3
Sample D Female 74.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.0
67978762 Antisense, RP_040923_01_H01, Mouse strain C57BL/6J (56 days, male) 12.0

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The Human Protein Atlas

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