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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.3 nTPM
HPA:6.3 nTPM
GTEx:5.4 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:20.9 nTPM
Mouse:15.8 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 6.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.2
2411 Female, age 72, unknown 6.4
1833 Male, age 53, unknown 5.8
1870 Female, age 42, unknown 5.8
1827 Male, age 72, unknown 5.7
2828 Female, age 72, unknown 5.5
1830 Male, age 51, unknown 5.2
2219 Male, age 76, both hemispheres 4.9
2666 Male, age 74, left hemisphere 4.9
2586 Male, age 75, left hemisphere 4.8
2019 Male, age 18, unknown 3.4
Dorsal raphe nucleus
nTPM: 5.7
2047 Male, age 72, unknown 6.9
2298 Female, age 72, unknown 6.1
2750 Male, age 76, both hemispheres 5.7
2016 Female, age 72, unknown 5.6
1828 Male, age 53, unknown 4.4
Inferior colliculus
nTPM: 4.9
1848 Female, age 42, unknown 5.3
2097 Female, age 72, unknown 5.3
2849 Male, age 72, unknown 4.7
1890 Male, age 53, unknown 4.3
Median raphe nucleus
nTPM: 6.3
2220 Male, age 76, midline 6.3
Pedunculopontine tegmental nucleus
nTPM: 4.4
1921 Female, age 85, both hemispheres 5.8
2334 Male, age 80, both hemispheres 5.2
2338 Male, age 61, both hemispheres 2.2
Periaquaductal grey, anterior
nTPM: 5.5
2502 Female, age 75, unknown 5.9
1947 Male, age 18, unknown 5.8
1795 Male, age 51, unknown 4.7
Periaquaductal grey, dorsal
nTPM: 6.1
1840 Male, age 53, unknown 8.4
2464 Female, age 72, unknown 5.8
2850 Male, age 76, both hemispheres 5.6
1831 Male, age 72, unknown 4.5
Periaquaductal grey, lateral
nTPM: 5.3
2053 Male, age 18, unknown 6.0
2140 Male, age 76, both hemispheres 5.7
2272 Male, age 74, both hemispheres 4.2
Pretectal area
nTPM: 4.8
2825 Male, age 18, unknown 5.8
2316 Male, age 76, right hemisphere 5.6
1815 Male, age 53, unknown 5.5
2224 Female, age 72, unknown 5.4
1817 Female, age 42, unknown 5.2
2273 Male, age 74, both hemispheres 4.8
1816 Male, age 51, unknown 4.7
2007 Male, age 72, unknown 4.4
1944 Female, age 72, unknown 4.2
2667 Female, age 75, unknown 4.1
2407 Male, age 75, both hemispheres 3.1
Red nucleus
nTPM: 3.8
2503 Female, age 72, unknown 4.9
1821 Female, age 72, unknown 4.8
1904 Male, age 53, unknown 4.4
2588 Male, age 74, left hemisphere 4.2
1865 Male, age 51, unknown 3.9
1954 Female, age 42, unknown 3.9
2823 Male, age 76, right hemisphere 3.8
2227 Male, age 72, unknown 3.5
2769 Male, age 72, unknown 3.3
2725 Female, age 75, unknown 3.2
2785 Male, age 18, unknown 3.1
2584 Male, age 75, left hemisphere 3.0
Substantia nigra
nTPM: 6.2
1851 Male, age 51, unknown 8.2
1916 Female, age 42, unknown 8.1
2241 Male, age 72, unknown 7.7
2409 Female, age 72, unknown 6.8
2665 Male, age 74, both hemispheres 6.3
2699 Male, age 18, unknown 5.9
2590 Female, age 75, unknown 5.6
2583 Male, age 75, right hemisphere 4.8
1889 Female, age 72, unknown 4.6
1941 Male, age 53, unknown 3.9
Superior colliculus
nTPM: 5.0
2668 Female, age 75, unknown 6.5
2261 Male, age 18, unknown 5.9
1796 Male, age 53, unknown 5.5
1913 Female, age 42, unknown 5.2
1995 Male, age 72, unknown 5.1
2587 Male, age 74, left hemisphere 4.6
1895 Male, age 76, right hemisphere 4.4
1839 Male, age 51, unknown 4.3
2087 Female, age 72, unknown 4.2
2664 Male, age 75, both hemispheres 4.1
Ventral tegmental area
nTPM: 6.1
2410 Female, age 72, unknown 7.3
1915 Female, age 42, unknown 6.4
2218 Male, age 76, both hemispheres 6.0
2021 Male, age 53, unknown 5.8
1942 Male, age 51, unknown 5.7
2223 Female, age 72, unknown 5.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.4
Samples: 139

Max nTPM: 15.2
Min nTPM: 3.0
Std nTPM: 1.5
Median nTPM: 5.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 10.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 9.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 9.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 7.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 7.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 7.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 7.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 7.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 7.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 7.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.2
FF:10158-103A5 76 years, female 51.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.9
Pig sample Sample description nTPM
Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 27.2
Min nTPM: 17.9
Sample A Female 17.9
Sample B Female 18.0
Sample C Male 27.2
Sample D Male 20.6
Periaqueductal gray
nTPM: 19.2
Samples: 3

Max nTPM: 20.8
Min nTPM: 17.8
Sample B Female 19.1
Sample C Male 20.8
Sample D Male 17.8
Substantia nigra
nTPM: 19.5
Samples: 4

Max nTPM: 22.0
Min nTPM: 15.7
Sample A Female 20.4
Sample B Female 20.0
Sample C Male 22.0
Sample D Male 15.7
Superior colliculi
nTPM: 19.0
Samples: 4

Max nTPM: 21.5
Min nTPM: 17.3
Sample A Female 17.3
Sample B Female 21.5
Sample C Male 19.4
Sample D Male 17.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 17.8
Min nTPM: 12.1
Sample A Male 12.1
Sample B Male 17.2
Sample C Female 17.8
Sample D Female 16.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
73818801 Antisense, RP_051121_01_D06, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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