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PSMA6
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:92.2 nTPM
HPA:92.2 nTPM
GTEx:80.9 nTPM
FANTOM5:96.0 Scaled Tags Per Million
Mouse:218.1 nTPM
Allen mouse:8.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003049
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 92.2
Sample id Sample description nTPM
Hippocampus
nTPM: 87.4
1898 Male, age 80, left hemisphere 98.0
1855 Male, age 76, left hemisphere 87.4
2621 Female, age 67, right hemisphere 86.8
2529 Female, age 94, left hemisphere 84.8
1911 Female, age 85, right hemisphere 84.0
2148 Female, age 91, left hemisphere 83.4
Dentate gyrus
nTPM: 87.7
2010 Male, age 76, both hemispheres 95.1
1927 Female, age 91, both hemispheres 91.7
2246 Female, age 85, both hemispheres 88.0
2530 Female, age 94, left hemisphere 85.4
2528 Male, age 74, both hemispheres 84.9
2531 Female, age 67, both hemispheres 81.0
Entorhinal gyrus
nTPM: 84.7
1938 Female, age 85, left hemisphere 88.5
1787 Male, age 76, left hemisphere 85.9
2764 Male, age 80, right hemisphere 85.7
2117 Female, age 91, right hemisphere 83.6
2686 Male, age 75, right hemisphere 82.9
2613 Female, age 94, left hemisphere 81.5
Hippocampus, CA1
nTPM: 90.1
2749 Male, age 80, left hemisphere 98.7
1873 Female, age 85, both hemispheres 92.6
2045 Male, age 76, both hemispheres 90.6
2527 Male, age 74, both hemispheres 87.0
2082 Female, age 91, right hemisphere 81.8
Hippocampus, CA2
nTPM: 87.9
1892 Male, age 76, both hemispheres 93.1
1963 Male, age 80, left hemisphere 90.5
2249 Male, age 74, both hemispheres 88.8
2437 Female, age 94, left hemisphere 88.2
1940 Female, age 85, left hemisphere 84.8
2113 Female, age 91, right hemisphere 82.0
Hippocampus, CA3
nTPM: 87.8
1867 Male, age 76, both hemispheres 91.9
2137 Male, age 80, left hemisphere 87.8
2620 Female, age 94, left hemisphere 87.4
2436 Male, age 74, both hemispheres 87.3
1891 Female, age 85, both hemispheres 86.7
2861 Female, age 67, both hemispheres 86.0
Parahippocampal cortex
nTPM: 87.6
1850 Male, age 80, both hemispheres 94.8
2018 Male, age 76, both hemispheres 91.0
1933 Female, age 85, both hemispheres 89.6
1990 Female, age 91, right hemisphere 87.2
2250 Female, age 67, right hemisphere 86.8
2692 Male, age 74, both hemispheres 86.3
2532 Female, age 72, left hemisphere 85.8
2245 Female, age 91, both hemispheres 85.3
2693 Female, age 94, both hemispheres 85.2
2622 Female, age 67, right hemisphere 84.1
Perirhinal gyrus
nTPM: 92.2
1847 Female, age 91, left hemisphere 96.3
1841 Female, age 85, right hemisphere 95.7
1794 Male, age 80, right hemisphere 92.7
2521 Female, age 94, right hemisphere 88.7
2848 Male, age 76, right hemisphere 87.4
Subiculum
nTPM: 86.7
2042 Male, age 76, both hemispheres 90.0
1901 Male, age 80, both hemispheres 88.1
1977 Female, age 85, both hemispheres 88.0
2438 Female, age 94, left hemisphere 87.0
2619 Male, age 74, both hemispheres 85.7
2729 Female, age 91, right hemisphere 81.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 80.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 80.9
Samples: 197

Max nTPM: 226.1
Min nTPM: 52.4
Std nTPM: 20.9
Median nTPM: 76.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 226.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 208.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 156.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 150.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 123.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 122.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 121.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 117.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 111.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 110.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 105.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 96.0
FF:10169-103B7 60 years, female 118.2
FF:10153-102I9 76 years, female 73.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 218.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 197.9
Samples: 4

Max nTPM: 223.3
Min nTPM: 181.6
Sample A Male 186.1
Sample B Male 200.4
Sample C Female 223.3
Sample D Female 181.6
Hippocampal formation
nTPM: 218.1
Samples: 4

Max nTPM: 266.2
Min nTPM: 196.6
Sample A Male 266.2
Sample B Male 196.6
Sample C Female 201.2
Sample D Female 208.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.4
69817408 Antisense, RP_050510_03_C12, Mouse strain C57BL/6J (56 days, male) 8.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.