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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.1 nTPM
HPA:25.1 nTPM
GTEx:22.6 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:22.2 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.6
1827 Male, age 72, unknown 24.3
2666 Male, age 74, left hemisphere 23.7
2019 Male, age 18, unknown 23.6
2586 Male, age 75, left hemisphere 23.5
2828 Female, age 72, unknown 23.5
2411 Female, age 72, unknown 22.6
1870 Female, age 42, unknown 21.6
1833 Male, age 53, unknown 21.4
2219 Male, age 76, both hemispheres 21.2
1830 Male, age 51, unknown 20.8
Dorsal raphe nucleus
nTPM: 23.3
2298 Female, age 72, unknown 25.8
2047 Male, age 72, unknown 23.7
2750 Male, age 76, both hemispheres 22.9
1828 Male, age 53, unknown 22.2
2016 Female, age 72, unknown 21.6
Inferior colliculus
nTPM: 20.9
2097 Female, age 72, unknown 22.7
1890 Male, age 53, unknown 22.6
1848 Female, age 42, unknown 19.8
2849 Male, age 72, unknown 18.7
Median raphe nucleus
nTPM: 23.8
2220 Male, age 76, midline 23.8
Pedunculopontine tegmental nucleus
nTPM: 22.3
1921 Female, age 85, both hemispheres 22.9
2334 Male, age 80, both hemispheres 22.7
2338 Male, age 61, both hemispheres 21.3
Periaquaductal grey, anterior
nTPM: 22.6
1795 Male, age 51, unknown 24.1
1947 Male, age 18, unknown 22.2
2502 Female, age 75, unknown 21.5
Periaquaductal grey, dorsal
nTPM: 21.2
1831 Male, age 72, unknown 23.7
2464 Female, age 72, unknown 20.7
2850 Male, age 76, both hemispheres 20.6
1840 Male, age 53, unknown 19.9
Periaquaductal grey, lateral
nTPM: 21.4
2272 Male, age 74, both hemispheres 23.0
2053 Male, age 18, unknown 21.1
2140 Male, age 76, both hemispheres 20.2
Pretectal area
nTPM: 24.3
1816 Male, age 51, unknown 29.4
1944 Female, age 72, unknown 26.7
2007 Male, age 72, unknown 26.0
1817 Female, age 42, unknown 25.7
1815 Male, age 53, unknown 24.9
2273 Male, age 74, both hemispheres 23.2
2667 Female, age 75, unknown 23.1
2224 Female, age 72, unknown 22.7
2407 Male, age 75, both hemispheres 22.7
2316 Male, age 76, right hemisphere 21.6
2825 Male, age 18, unknown 20.8
Red nucleus
nTPM: 21.8
2725 Female, age 75, unknown 24.1
2785 Male, age 18, unknown 23.7
2823 Male, age 76, right hemisphere 22.4
1904 Male, age 53, unknown 22.1
2584 Male, age 75, left hemisphere 22.1
1821 Female, age 72, unknown 21.9
2588 Male, age 74, left hemisphere 21.6
1865 Male, age 51, unknown 21.4
2503 Female, age 72, unknown 21.3
1954 Female, age 42, unknown 21.2
2227 Male, age 72, unknown 19.9
2769 Male, age 72, unknown 19.9
Substantia nigra
nTPM: 25.1
1916 Female, age 42, unknown 30.7
1851 Male, age 51, unknown 26.7
2241 Male, age 72, unknown 26.1
1941 Male, age 53, unknown 24.7
2409 Female, age 72, unknown 24.7
2583 Male, age 75, right hemisphere 24.5
1889 Female, age 72, unknown 24.3
2590 Female, age 75, unknown 23.8
2699 Male, age 18, unknown 23.1
2665 Male, age 74, both hemispheres 22.1
Superior colliculus
nTPM: 22.4
2087 Female, age 72, unknown 25.5
2261 Male, age 18, unknown 25.1
1796 Male, age 53, unknown 24.4
2668 Female, age 75, unknown 22.9
1995 Male, age 72, unknown 22.0
1913 Female, age 42, unknown 21.7
2664 Male, age 75, both hemispheres 21.2
2587 Male, age 74, left hemisphere 21.0
1895 Male, age 76, right hemisphere 20.7
1839 Male, age 51, unknown 19.5
Ventral tegmental area
nTPM: 24.0
2410 Female, age 72, unknown 26.6
1915 Female, age 42, unknown 26.2
2218 Male, age 76, both hemispheres 23.9
1942 Male, age 51, unknown 22.5
2021 Male, age 53, unknown 22.5
2223 Female, age 72, unknown 22.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.6
Samples: 139

Max nTPM: 46.7
Min nTPM: 8.2
Std nTPM: 5.9
Median nTPM: 21.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 46.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 41.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 39.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 34.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 34.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 33.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 32.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 32.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 32.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 32.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 31.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.9
FF:10158-103A5 76 years, female 14.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.6
Pig sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 18.5
Min nTPM: 9.4
Sample A Female 18.5
Sample B Female 13.6
Sample C Male 11.0
Sample D Male 9.4
Periaqueductal gray
nTPM: 11.9
Samples: 3

Max nTPM: 12.7
Min nTPM: 11.3
Sample B Female 11.7
Sample C Male 12.7
Sample D Male 11.3
Substantia nigra
nTPM: 13.6
Samples: 4

Max nTPM: 16.1
Min nTPM: 12.1
Sample A Female 16.1
Sample B Female 12.1
Sample C Male 13.5
Sample D Male 12.6
Superior colliculi
nTPM: 11.6
Samples: 4

Max nTPM: 12.3
Min nTPM: 10.9
Sample A Female 12.3
Sample B Female 12.0
Sample C Male 10.9
Sample D Male 11.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 24.3
Min nTPM: 20.1
Sample A Male 23.4
Sample B Male 20.1
Sample C Female 20.9
Sample D Female 24.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71616137 Antisense, RP_050927_02_F05, Mouse strain C57BL/6J (56 days, male) 0.5
74273307 Antisense, RP_050927_02_F05, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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