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SNPH
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:49.6 nTPM
HPA:49.6 nTPM
GTEx:45.9 nTPM
FANTOM5:120.5 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:106.6 nTPM
Allen mouse:6.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA049393
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 49.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 24.0
1781 Male, age 74, unknown 31.8
2289 Male, age 61, right hemisphere 28.6
1857 Female, age 85, left hemisphere 27.3
2288 Male, age 75, left hemisphere 24.8
2290 Female, age 72, unknown 23.5
1854 Male, age 80, left hemisphere 22.1
2846 Female, age 79, unknown 18.7
2481 Female, age 94, left hemisphere 14.9
Claustrum
nTPM: 33.2
2284 Female, age 91, both hemispheres 51.5
2568 Male, age 61, both hemispheres 45.8
2491 Male, age 75, both hemispheres 43.7
2645 Female, age 72, unknown 43.0
2198 Male, age 80, both hemispheres 39.1
2392 Female, age 94, both hemispheres 26.6
1956 Male, age 74, unknown 20.8
2196 Female, age 79, unknown 15.6
2292 Female, age 85, both hemispheres 12.9
Globus pallidus, externus
nTPM: 4.6
2646 Male, age 61, right hemisphere 8.8
2772 Female, age 79, unknown 8.7
2567 Female, age 72, unknown 5.6
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
Globus pallidus, internus
nTPM: 2.7
2483 Female, age 94, right hemisphere 9.0
1818 Male, age 74, unknown 7.3
2566 Female, age 72, unknown 2.4
2037 Male, age 80, right hemisphere 0.6
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 22.2
1856 Female, age 91, right hemisphere 38.6
2824 Male, age 61, right hemisphere 30.5
1783 Male, age 74, unknown 28.6
1806 Female, age 85, left hemisphere 27.8
2286 Male, age 75, left hemisphere 25.8
2698 Female, age 72, unknown 11.6
2732 Male, age 80, right hemisphere 9.8
2391 Female, age 94, left hemisphere 4.7
Nucleus basalis of Meynert
nTPM: 17.4
2484 Female, age 94, left hemisphere 25.7
2393 Male, age 80, right hemisphere 18.0
2821 Male, age 75, both hemispheres 14.3
2569 Male, age 61, both hemispheres 11.3
Nucleus of the diagonal band
nTPM: 37.9
2029 Male, age 61, right hemisphere 47.7
2775 Male, age 80, right hemisphere 43.9
2195 Female, age 85, both hemispheres 39.8
1812 Female, age 91, both hemispheres 39.6
1979 Male, age 74, unknown 18.7
Olfactory tubercle
nTPM: 49.6
1998 Female, age 91, both hemispheres 59.0
2487 Female, age 94, left hemisphere 53.3
2856 Male, age 75, right hemisphere 50.6
1846 Male, age 80, right hemisphere 35.7
Putamen
nTPM: 26.1
2647 Male, age 75, left hemisphere 40.1
1937 Female, age 91, right hemisphere 31.8
1838 Male, age 80, right hemisphere 27.7
2466 Female, age 79, unknown 24.5
2489 Female, age 72, unknown 23.3
1829 Male, age 74, unknown 20.1
2482 Female, age 94, left hemisphere 15.3
Septal nuclei
nTPM: 32.8
1960 Male, age 74, unknown 50.2
2059 Female, age 85, both hemispheres 42.7
2629 Female, age 94, right hemisphere 35.0
2031 Female, age 72, unknown 33.9
2009 Female, age 91, both hemispheres 33.4
2394 Male, age 61, left hemisphere 22.2
2199 Male, age 80, right hemisphere 12.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.8
Samples: 246

Max nTPM: 71.1
Min nTPM: 12.2
Std nTPM: 10.3
Median nTPM: 38.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 71.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 62.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 61.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 61.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 59.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 59.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 57.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 56.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 56.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 56.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 55.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.9
Samples: 246

Max nTPM: 91.9
Min nTPM: 5.2
Std nTPM: 13.3
Median nTPM: 47.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 91.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 91.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 79.6
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 78.7
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 77.3
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 76.6
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 75.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 75.4
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 71.9
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 69.8
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 68.7
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Brain - Putamen (basal ganglia)
Average nTPM: 37.8
Samples: 205

Max nTPM: 68.0
Min nTPM: 7.5
Std nTPM: 10.6
Median nTPM: 37.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 68.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 65.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 62.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 61.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 60.4
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 59.8
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 58.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 57.6
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 57.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 57.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 56.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.6
FF:10164-103B2 76 years, female 85.6
Globus pallidus
Scaled Tags Per Million: 36.0
FF:10175-103C4 60 years, female 48.1
FF:10161-103A8 76 years, female 24.0
Nucleus accumbens
Scaled Tags Per Million: 120.5
FF:10037-101F1 23-56 years, mixed 120.5
Putamen
Scaled Tags Per Million: 88.3
FF:10176-103C5 60 years, female 88.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.9
Pig sample Sample description nTPM
Caudate
nTPM: 17.9
Samples: 4

Max nTPM: 22.5
Min nTPM: 13.2
Sample A Female 13.2
Sample B Female 18.5
Sample C Male 22.5
Sample D Male 17.3
Putamen
nTPM: 17.1
Samples: 4

Max nTPM: 23.4
Min nTPM: 11.0
Sample A Female 11.0
Sample B Female 15.6
Sample C Male 23.4
Sample D Male 18.5
Septum
nTPM: 15.3
Samples: 4

Max nTPM: 19.5
Min nTPM: 13.6
Sample A Female 13.8
Sample B Female 14.4
Sample C Male 19.5
Sample D Male 13.6
Ventral pallidum
nTPM: 16.8
Samples: 4

Max nTPM: 25.5
Min nTPM: 12.5
Sample A Female 14.0
Sample B Female 15.0
Sample C Male 25.5
Sample D Male 12.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 106.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 106.6
Samples: 4

Max nTPM: 113.3
Min nTPM: 98.8
Sample A Male 98.8
Sample B Male 106.6
Sample C Female 107.8
Sample D Female 113.3
Septum
nTPM: 63.6
Samples: 4

Max nTPM: 71.8
Min nTPM: 58.0
Sample A Male 71.8
Sample B Male 64.8
Sample C Female 59.8
Sample D Female 58.0
Ventral forebrain
nTPM: 96.5
Samples: 4

Max nTPM: 101.6
Min nTPM: 85.3
Sample A Male 101.6
Sample B Male 85.3
Sample C Female 99.8
Sample D Female 99.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.9
69885582 Antisense, RP_050512_02_H09, Mouse strain C57BL/6J (56 days, male) 6.9
Pallidum
Expression energy: 6.4
69885582 Antisense, RP_050512_02_H09, Mouse strain C57BL/6J (56 days, male) 6.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.