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SNPH
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:54.0 nTPM
HPA:54.0 nTPM
GTEx:61.5 nTPM
FANTOM5:113.6 Scaled Tags Per Million
Pig:25.3 nTPM
Mouse:142.7 nTPM
Allen mouse:10.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA049393
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 54.0
Sample id Sample description nTPM
Hippocampus
nTPM: 53.8
2621 Female, age 67, right hemisphere 68.7
2148 Female, age 91, left hemisphere 62.0
2529 Female, age 94, left hemisphere 53.5
1898 Male, age 80, left hemisphere 50.7
1911 Female, age 85, right hemisphere 48.1
1855 Male, age 76, left hemisphere 39.6
Dentate gyrus
nTPM: 50.5
2531 Female, age 67, both hemispheres 66.8
1927 Female, age 91, both hemispheres 62.7
2528 Male, age 74, both hemispheres 50.9
2530 Female, age 94, left hemisphere 49.1
2246 Female, age 85, both hemispheres 39.2
2010 Male, age 76, both hemispheres 34.0
Entorhinal gyrus
nTPM: 49.1
2613 Female, age 94, left hemisphere 69.7
2686 Male, age 75, right hemisphere 53.1
2764 Male, age 80, right hemisphere 51.5
1938 Female, age 85, left hemisphere 43.6
1787 Male, age 76, left hemisphere 39.7
2117 Female, age 91, right hemisphere 37.0
Hippocampus, CA1
nTPM: 53.9
2749 Male, age 80, left hemisphere 76.0
2527 Male, age 74, both hemispheres 72.7
1873 Female, age 85, both hemispheres 45.2
2082 Female, age 91, right hemisphere 44.8
2045 Male, age 76, both hemispheres 30.7
Hippocampus, CA2
nTPM: 47.8
1963 Male, age 80, left hemisphere 73.3
2113 Female, age 91, right hemisphere 52.5
2437 Female, age 94, left hemisphere 48.5
2249 Male, age 74, both hemispheres 42.8
1892 Male, age 76, both hemispheres 42.5
1940 Female, age 85, left hemisphere 27.4
Hippocampus, CA3
nTPM: 54.0
2861 Female, age 67, both hemispheres 82.9
2137 Male, age 80, left hemisphere 73.3
2620 Female, age 94, left hemisphere 63.5
2436 Male, age 74, both hemispheres 40.7
1891 Female, age 85, both hemispheres 32.7
1867 Male, age 76, both hemispheres 31.2
Parahippocampal cortex
nTPM: 46.2
2245 Female, age 91, both hemispheres 67.4
2622 Female, age 67, right hemisphere 55.2
2250 Female, age 67, right hemisphere 51.1
2693 Female, age 94, both hemispheres 49.7
1990 Female, age 91, right hemisphere 45.7
1933 Female, age 85, both hemispheres 45.5
2692 Male, age 74, both hemispheres 42.8
1850 Male, age 80, both hemispheres 39.1
2532 Female, age 72, left hemisphere 34.7
2018 Male, age 76, both hemispheres 30.8
Perirhinal gyrus
nTPM: 48.1
1847 Female, age 91, left hemisphere 65.0
2521 Female, age 94, right hemisphere 55.6
1794 Male, age 80, right hemisphere 48.8
1841 Female, age 85, right hemisphere 37.0
2848 Male, age 76, right hemisphere 33.9
Subiculum
nTPM: 36.0
2619 Male, age 74, both hemispheres 43.0
2729 Female, age 91, right hemisphere 42.2
1977 Female, age 85, both hemispheres 39.9
1901 Male, age 80, both hemispheres 37.5
2438 Female, age 94, left hemisphere 33.2
2042 Male, age 76, both hemispheres 20.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 61.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 61.5
Samples: 197

Max nTPM: 206.0
Min nTPM: 4.4
Std nTPM: 30.9
Median nTPM: 60.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 206.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 143.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 130.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 129.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 127.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 121.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 120.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 120.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 115.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 111.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 111.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 113.6
FF:10169-103B7 60 years, female 127.6
FF:10153-102I9 76 years, female 99.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 21.3
Samples: 4

Max nTPM: 26.4
Min nTPM: 16.3
Sample A Female 26.4
Sample B Female 25.0
Sample C Male 16.3
Sample D Male 17.3
Entorhinal cortex
nTPM: 23.4
Samples: 4

Max nTPM: 25.0
Min nTPM: 22.2
Sample A Female 23.9
Sample B Female 22.2
Sample C Male 25.0
Sample D Male 22.5
Subiculum
nTPM: 19.8
Samples: 4

Max nTPM: 23.2
Min nTPM: 16.8
Sample A Female 23.2
Sample B Female 17.0
Sample C Male 22.3
Sample D Male 16.8
Ventral hippocampus
nTPM: 25.3
Samples: 4

Max nTPM: 33.2
Min nTPM: 16.7
Sample A Female 28.1
Sample B Female 16.7
Sample C Male 33.2
Sample D Male 23.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 142.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 129.8
Samples: 4

Max nTPM: 136.2
Min nTPM: 120.7
Sample A Male 131.2
Sample B Male 120.7
Sample C Female 136.2
Sample D Female 131.2
Hippocampal formation
nTPM: 142.7
Samples: 4

Max nTPM: 151.9
Min nTPM: 136.9
Sample A Male 136.9
Sample B Male 143.1
Sample C Female 151.9
Sample D Female 138.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.9
69885582 Antisense, RP_050512_02_H09, Mouse strain C57BL/6J (56 days, male) 10.9

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