ABOUTMENU
HELP
NEWS
HCK
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:5.0 nTPM
HPA:5.0 nTPM
GTEx:3.6 nTPM
FANTOM5:42.6 Scaled Tags Per Million
Pig:8.1 nTPM
Mouse:2.7 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB005195
Glial cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.2
2289 Male, age 61, right hemisphere 4.9
2846 Female, age 79, unknown 4.9
2481 Female, age 94, left hemisphere 4.8
1857 Female, age 85, left hemisphere 4.6
1781 Male, age 74, unknown 4.5
1854 Male, age 80, left hemisphere 4.4
2290 Female, age 72, unknown 3.4
2288 Male, age 75, left hemisphere 2.5
Claustrum
nTPM: 3.7
2292 Female, age 85, both hemispheres 5.6
2196 Female, age 79, unknown 4.5
2198 Male, age 80, both hemispheres 4.1
1956 Male, age 74, unknown 3.8
2645 Female, age 72, unknown 3.6
2284 Female, age 91, both hemispheres 3.1
2491 Male, age 75, both hemispheres 3.1
2392 Female, age 94, both hemispheres 3.0
2568 Male, age 61, both hemispheres 2.4
Globus pallidus, externus
nTPM: 5.0
2772 Female, age 79, unknown 5.8
2395 Male, age 75, both hemispheres 5.7
1996 Male, age 80, right hemisphere 5.6
2567 Female, age 72, unknown 5.1
2646 Male, age 61, right hemisphere 2.7
Globus pallidus, internus
nTPM: 4.8
2037 Male, age 80, right hemisphere 5.8
2566 Female, age 72, unknown 5.6
1818 Male, age 74, unknown 5.3
2111 Female, age 85, right hemisphere 4.8
2778 Female, age 91, both hemispheres 4.7
2483 Female, age 94, right hemisphere 4.2
2287 Male, age 75, right hemisphere 3.4
Nucleus accumbens
nTPM: 3.9
2391 Female, age 94, left hemisphere 5.7
2732 Male, age 80, right hemisphere 4.8
1856 Female, age 91, right hemisphere 4.5
2698 Female, age 72, unknown 4.1
1806 Female, age 85, left hemisphere 4.0
1783 Male, age 74, unknown 3.5
2286 Male, age 75, left hemisphere 2.5
2824 Male, age 61, right hemisphere 2.3
Nucleus basalis of Meynert
nTPM: 4.5
2821 Male, age 75, both hemispheres 5.8
2393 Male, age 80, right hemisphere 5.0
2484 Female, age 94, left hemisphere 4.3
2569 Male, age 61, both hemispheres 2.7
Nucleus of the diagonal band
nTPM: 3.5
1812 Female, age 91, both hemispheres 4.3
1979 Male, age 74, unknown 3.7
2775 Male, age 80, right hemisphere 3.4
2029 Male, age 61, right hemisphere 3.1
2195 Female, age 85, both hemispheres 3.0
Olfactory tubercle
nTPM: 3.4
2487 Female, age 94, left hemisphere 3.8
1846 Male, age 80, right hemisphere 3.7
1998 Female, age 91, both hemispheres 3.0
2856 Male, age 75, right hemisphere 3.0
Putamen
nTPM: 4.1
2482 Female, age 94, left hemisphere 6.9
1937 Female, age 91, right hemisphere 4.5
2489 Female, age 72, unknown 4.1
2466 Female, age 79, unknown 3.9
1829 Male, age 74, unknown 3.6
1838 Male, age 80, right hemisphere 3.3
2647 Male, age 75, left hemisphere 2.5
Septal nuclei
nTPM: 4.1
2394 Male, age 61, left hemisphere 5.1
2199 Male, age 80, right hemisphere 4.9
2009 Female, age 91, both hemispheres 4.1
2059 Female, age 85, both hemispheres 3.9
2031 Female, age 72, unknown 3.8
2629 Female, age 94, right hemisphere 3.6
1960 Male, age 74, unknown 3.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.6
Samples: 246

Max nTPM: 21.6
Min nTPM: 0.1
Std nTPM: 3.1
Median nTPM: 2.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 21.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 17.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 15.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 14.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 14.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 14.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 14.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 11.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 11.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 10.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 10.0
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.3
Samples: 246

Max nTPM: 20.1
Min nTPM: 0.1
Std nTPM: 3.2
Median nTPM: 2.1
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 20.1
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 16.5
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 16.0
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 15.8
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 15.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 13.8
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 13.2
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 12.3
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 11.8
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 10.7
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 10.5
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 3.3
Samples: 205

Max nTPM: 15.9
Min nTPM: 0.0
Std nTPM: 2.9
Median nTPM: 2.4
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 15.9
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 14.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 14.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 14.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 13.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 13.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 12.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 11.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 11.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 10.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 9.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.3
FF:10164-103B2 76 years, female 19.3
Globus pallidus
Scaled Tags Per Million: 42.6
FF:10161-103A8 76 years, female 56.0
FF:10175-103C4 60 years, female 29.2
Nucleus accumbens
Scaled Tags Per Million: 7.9
FF:10037-101F1 23-56 years, mixed 7.9
Putamen
Scaled Tags Per Million: 14.7
FF:10176-103C5 60 years, female 14.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.1
Pig sample Sample description nTPM
Caudate
nTPM: 3.8
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.0
Sample A Female 4.5
Sample B Female 4.1
Sample C Male 3.4
Sample D Male 3.0
Putamen
nTPM: 3.9
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.2
Sample A Female 5.5
Sample B Female 3.2
Sample C Male 3.4
Sample D Male 3.5
Septum
nTPM: 8.2
Samples: 4

Max nTPM: 11.4
Min nTPM: 4.9
Sample A Female 10.0
Sample B Female 4.9
Sample C Male 11.4
Sample D Male 6.3
Ventral pallidum
nTPM: 4.7
Samples: 4

Max nTPM: 6.0
Min nTPM: 4.1
Sample A Female 6.0
Sample B Female 4.1
Sample C Male 4.6
Sample D Male 4.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.7
Samples: 4

Max nTPM: 3.3
Min nTPM: 1.8
Sample A Male 2.6
Sample B Male 1.8
Sample C Female 3.3
Sample D Female 3.0
Septum
nTPM: 1.7
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.2
Sample A Male 2.2
Sample B Male 1.2
Sample C Female 1.7
Sample D Female 1.8
Ventral forebrain
nTPM: 2.2
Samples: 4

Max nTPM: 2.3
Min nTPM: 2.1
Sample A Male 2.1
Sample B Male 2.2
Sample C Female 2.3
Sample D Female 2.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68301676 Antisense, RP_041130_01_F05, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.3
68301676 Antisense, RP_041130_01_F05, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.