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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.0 nTPM
HPA:8.0 nTPM
GTEx:5.9 nTPM
FANTOM5:17.9 Scaled Tags Per Million
Pig:6.4 nTPM
Mouse:5.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.9
2411 Female, age 72, unknown 9.1
1870 Female, age 42, unknown 8.4
2019 Male, age 18, unknown 8.3
1833 Male, age 53, unknown 7.5
2666 Male, age 74, left hemisphere 7.2
1830 Male, age 51, unknown 7.0
1827 Male, age 72, unknown 6.4
2828 Female, age 72, unknown 5.6
2219 Male, age 76, both hemispheres 4.9
2586 Male, age 75, left hemisphere 4.5
Dorsal raphe nucleus
nTPM: 6.5
2016 Female, age 72, unknown 8.3
2750 Male, age 76, both hemispheres 6.9
1828 Male, age 53, unknown 6.3
2047 Male, age 72, unknown 5.7
2298 Female, age 72, unknown 5.4
Inferior colliculus
nTPM: 6.7
1890 Male, age 53, unknown 7.3
1848 Female, age 42, unknown 7.2
2097 Female, age 72, unknown 6.9
2849 Male, age 72, unknown 5.4
Median raphe nucleus
nTPM: 5.5
2220 Male, age 76, midline 5.5
Pedunculopontine tegmental nucleus
nTPM: 6.6
2334 Male, age 80, both hemispheres 7.2
1921 Female, age 85, both hemispheres 6.8
2338 Male, age 61, both hemispheres 5.8
Periaquaductal grey, anterior
nTPM: 6.7
2502 Female, age 75, unknown 8.0
1947 Male, age 18, unknown 6.6
1795 Male, age 51, unknown 5.6
Periaquaductal grey, dorsal
nTPM: 6.3
1840 Male, age 53, unknown 6.9
2464 Female, age 72, unknown 6.7
1831 Male, age 72, unknown 6.0
2850 Male, age 76, both hemispheres 5.7
Periaquaductal grey, lateral
nTPM: 5.8
2053 Male, age 18, unknown 6.4
2140 Male, age 76, both hemispheres 6.2
2272 Male, age 74, both hemispheres 4.7
Pretectal area
nTPM: 6.5
2316 Male, age 76, right hemisphere 7.9
1815 Male, age 53, unknown 7.5
2007 Male, age 72, unknown 7.0
2667 Female, age 75, unknown 6.6
1816 Male, age 51, unknown 6.3
1817 Female, age 42, unknown 6.3
2825 Male, age 18, unknown 6.2
2224 Female, age 72, unknown 6.1
2273 Male, age 74, both hemispheres 5.9
2407 Male, age 75, both hemispheres 5.8
1944 Female, age 72, unknown 5.7
Red nucleus
nTPM: 8.0
2503 Female, age 72, unknown 10.0
1821 Female, age 72, unknown 9.8
2588 Male, age 74, left hemisphere 9.3
1865 Male, age 51, unknown 8.8
1954 Female, age 42, unknown 8.7
1904 Male, age 53, unknown 8.1
2227 Male, age 72, unknown 7.7
2769 Male, age 72, unknown 7.7
2823 Male, age 76, right hemisphere 7.3
2725 Female, age 75, unknown 7.1
2785 Male, age 18, unknown 6.7
2584 Male, age 75, left hemisphere 5.1
Substantia nigra
nTPM: 7.2
2409 Female, age 72, unknown 10.1
2241 Male, age 72, unknown 9.6
1889 Female, age 72, unknown 8.1
2699 Male, age 18, unknown 7.1
1851 Male, age 51, unknown 6.9
2665 Male, age 74, both hemispheres 6.8
2583 Male, age 75, right hemisphere 6.1
1916 Female, age 42, unknown 5.9
2590 Female, age 75, unknown 5.9
1941 Male, age 53, unknown 5.7
Superior colliculus
nTPM: 7.0
2587 Male, age 74, left hemisphere 10.1
1839 Male, age 51, unknown 7.6
1995 Male, age 72, unknown 7.6
2668 Female, age 75, unknown 7.5
1895 Male, age 76, right hemisphere 7.4
1913 Female, age 42, unknown 7.3
2261 Male, age 18, unknown 6.2
1796 Male, age 53, unknown 6.1
2664 Male, age 75, both hemispheres 5.2
2087 Female, age 72, unknown 5.0
Ventral tegmental area
nTPM: 6.9
2223 Female, age 72, unknown 8.0
2410 Female, age 72, unknown 7.2
1915 Female, age 42, unknown 6.8
1942 Male, age 51, unknown 6.8
2021 Male, age 53, unknown 6.4
2218 Male, age 76, both hemispheres 6.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.9
Samples: 139

Max nTPM: 14.8
Min nTPM: 2.3
Std nTPM: 2.1
Median nTPM: 5.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 14.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 14.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 12.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 11.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 10.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 10.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 10.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 9.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 9.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 9.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 9.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.9
FF:10158-103A5 76 years, female 17.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.4
Pig sample Sample description nTPM
Midbrain
nTPM: 6.4
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.8
Sample A Female 7.4
Sample B Female 6.5
Sample C Male 5.9
Sample D Male 5.8
Periaqueductal gray
nTPM: 6.3
Samples: 3

Max nTPM: 6.7
Min nTPM: 5.9
Sample B Female 6.2
Sample C Male 5.9
Sample D Male 6.7
Substantia nigra
nTPM: 5.8
Samples: 4

Max nTPM: 6.0
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 5.9
Sample C Male 5.6
Sample D Male 6.0
Superior colliculi
nTPM: 6.0
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 5.7
Sample C Male 7.1
Sample D Male 5.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.0
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.4
Sample A Male 5.1
Sample B Male 4.4
Sample C Female 4.6
Sample D Female 5.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69817157 Antisense, RP_050510_02_G02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.