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PCSK1N
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		89.527
RNA expressioni
Consensus:105.6 nTPM
HPA:105.6 nTPM
GTEx:423.4 nTPM
FANTOM5:353.5 Scaled Tags Per Million
Pig:588.8 nTPM
Mouse:24.7 nTPM
Allen mouse:12.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003925Antibody HPA064734
Glial cells MediumMedium
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA003925
Hippocampal formation mean intensity 89.527
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 72.631
Molecular layer of the dentate gyrus 18.071
Granular dentate gyrus 26.416
CA1 - oriens layer 14.115
CA1 - pyramidal layer 16.977
CA1 - radiatum layer 15.521
CA2 - oriens layer 21.429
CA2 - pyramidal layer 21.647
CA2 - radiatum layer 20.421
CA3 - oriens layer 19.198
CA3 - pyramidal layer 17.032
CA3 - radiatum layer 16.498
Stratum lucidum 89.527
Lacunosum moleculare 15.092
Subiculum 17.022

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 105.6
Sample id Sample description nTPM
Hippocampus
nTPM: 80.2
2621 Female, age 67, right hemisphere 126.5
1898 Male, age 80, left hemisphere 115.2
2148 Female, age 91, left hemisphere 100.2
2529 Female, age 94, left hemisphere 81.9
1855 Male, age 76, left hemisphere 57.4
1911 Female, age 85, right hemisphere 0.0
Dentate gyrus
nTPM: 105.6
2530 Female, age 94, left hemisphere 242.1
2531 Female, age 67, both hemispheres 160.1
1927 Female, age 91, both hemispheres 108.5
2246 Female, age 85, both hemispheres 55.2
2010 Male, age 76, both hemispheres 49.0
2528 Male, age 74, both hemispheres 18.7
Entorhinal gyrus
nTPM: 73.5
2764 Male, age 80, right hemisphere 148.9
2613 Female, age 94, left hemisphere 110.2
1787 Male, age 76, left hemisphere 69.4
2117 Female, age 91, right hemisphere 41.4
2686 Male, age 75, right hemisphere 35.7
1938 Female, age 85, left hemisphere 35.3
Hippocampus, CA1
nTPM: 55.3
2749 Male, age 80, left hemisphere 159.7
2045 Male, age 76, both hemispheres 56.9
1873 Female, age 85, both hemispheres 30.1
2527 Male, age 74, both hemispheres 29.8
2082 Female, age 91, right hemisphere 0.0
Hippocampus, CA2
nTPM: 56.2
1963 Male, age 80, left hemisphere 137.9
2437 Female, age 94, left hemisphere 110.3
1892 Male, age 76, both hemispheres 49.1
2113 Female, age 91, right hemisphere 24.8
1940 Female, age 85, left hemisphere 15.4
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 70.5
2861 Female, age 67, both hemispheres 195.1
2620 Female, age 94, left hemisphere 143.1
2137 Male, age 80, left hemisphere 60.2
2436 Male, age 74, both hemispheres 22.7
1867 Male, age 76, both hemispheres 2.0
1891 Female, age 85, both hemispheres 0.0
Parahippocampal cortex
nTPM: 70.4
2245 Female, age 91, both hemispheres 187.5
2250 Female, age 67, right hemisphere 117.6
2622 Female, age 67, right hemisphere 101.2
2693 Female, age 94, both hemispheres 86.3
2532 Female, age 72, left hemisphere 68.6
1990 Female, age 91, right hemisphere 66.2
1933 Female, age 85, both hemispheres 38.7
1850 Male, age 80, both hemispheres 26.3
2018 Male, age 76, both hemispheres 11.4
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 100.2
1794 Male, age 80, right hemisphere 152.9
2521 Female, age 94, right hemisphere 151.8
1847 Female, age 91, left hemisphere 103.1
2848 Male, age 76, right hemisphere 60.7
1841 Female, age 85, right hemisphere 32.3
Subiculum
nTPM: 24.4
1977 Female, age 85, both hemispheres 72.2
2619 Male, age 74, both hemispheres 57.3
2438 Female, age 94, left hemisphere 13.4
2729 Female, age 91, right hemisphere 3.3
1901 Male, age 80, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 423.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 423.4
Samples: 197

Max nTPM: 1246.3
Min nTPM: 26.1
Std nTPM: 221.1
Median nTPM: 402.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 1246.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 1064.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 963.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 945.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 926.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 923.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 902.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 880.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 863.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 862.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 860.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 353.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 353.5
FF:10169-103B7 60 years, female 413.3
FF:10153-102I9 76 years, female 293.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 588.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 521.6
Samples: 4

Max nTPM: 666.4
Min nTPM: 338.9
Sample A Female 666.4
Sample B Female 492.2
Sample C Male 588.9
Sample D Male 338.9
Entorhinal cortex
nTPM: 557.7
Samples: 4

Max nTPM: 721.5
Min nTPM: 420.2
Sample A Female 530.5
Sample B Female 558.7
Sample C Male 721.5
Sample D Male 420.2
Subiculum
nTPM: 565.9
Samples: 4

Max nTPM: 877.7
Min nTPM: 393.5
Sample A Female 877.7
Sample B Female 490.0
Sample C Male 502.2
Sample D Male 393.5
Ventral hippocampus
nTPM: 588.9
Samples: 4

Max nTPM: 830.0
Min nTPM: 410.1
Sample A Female 659.0
Sample B Female 410.1
Sample C Male 830.0
Sample D Male 456.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.7
Samples: 4

Max nTPM: 34.1
Min nTPM: 17.1
Sample A Male 29.5
Sample B Male 34.1
Sample C Female 18.2
Sample D Female 17.1
Hippocampal formation
nTPM: 19.5
Samples: 4

Max nTPM: 25.8
Min nTPM: 14.5
Sample A Male 16.5
Sample B Male 21.3
Sample C Female 14.5
Sample D Female 25.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.7
79360249 Antisense, RP_071018_01_E06, Mouse strain C57BL/6J (56 days, male) 20.5
777 Antisense, RP_040315_01_19, Mouse strain C57BL/6J (56 days, male) 4.8
778 Antisense, RP_040315_01_19, Mouse strain C57BL/6J (56 days, male) 3.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.