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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:53.9 nTPM
HPA:53.9 nTPM
GTEx:38.9 nTPM
FANTOM5:76.3 Scaled Tags Per Million
Pig:17.8 nTPM
Mouse:94.7 nTPM
Allen mouse:2.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029849Antibody HPA029852
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 53.9
Sample id Sample description nTPM
Hippocampus
nTPM: 43.5
1898 Male, age 80, left hemisphere 51.9
2529 Female, age 94, left hemisphere 43.3
2621 Female, age 67, right hemisphere 42.5
2148 Female, age 91, left hemisphere 41.6
1855 Male, age 76, left hemisphere 41.3
1911 Female, age 85, right hemisphere 40.1
Dentate gyrus
nTPM: 41.8
2010 Male, age 76, both hemispheres 46.3
1927 Female, age 91, both hemispheres 45.9
2246 Female, age 85, both hemispheres 41.9
2528 Male, age 74, both hemispheres 40.0
2530 Female, age 94, left hemisphere 39.4
2531 Female, age 67, both hemispheres 37.5
Entorhinal gyrus
nTPM: 47.6
2764 Male, age 80, right hemisphere 51.4
1938 Female, age 85, left hemisphere 51.1
1787 Male, age 76, left hemisphere 48.7
2613 Female, age 94, left hemisphere 46.8
2686 Male, age 75, right hemisphere 44.6
2117 Female, age 91, right hemisphere 43.0
Hippocampus, CA1
nTPM: 48.6
2749 Male, age 80, left hemisphere 64.0
2527 Male, age 74, both hemispheres 47.0
1873 Female, age 85, both hemispheres 46.1
2082 Female, age 91, right hemisphere 43.0
2045 Male, age 76, both hemispheres 42.7
Hippocampus, CA2
nTPM: 45.2
1892 Male, age 76, both hemispheres 49.2
1963 Male, age 80, left hemisphere 47.1
2113 Female, age 91, right hemisphere 44.3
2249 Male, age 74, both hemispheres 44.2
2437 Female, age 94, left hemisphere 44.0
1940 Female, age 85, left hemisphere 42.7
Hippocampus, CA3
nTPM: 45.3
2137 Male, age 80, left hemisphere 57.4
1867 Male, age 76, both hemispheres 48.0
2436 Male, age 74, both hemispheres 43.4
1891 Female, age 85, both hemispheres 41.9
2861 Female, age 67, both hemispheres 40.7
2620 Female, age 94, left hemisphere 40.5
Parahippocampal cortex
nTPM: 50.5
1850 Male, age 80, both hemispheres 57.2
2250 Female, age 67, right hemisphere 53.6
1933 Female, age 85, both hemispheres 51.5
1990 Female, age 91, right hemisphere 51.0
2245 Female, age 91, both hemispheres 50.6
2693 Female, age 94, both hemispheres 50.3
2622 Female, age 67, right hemisphere 49.2
2532 Female, age 72, left hemisphere 47.7
2018 Male, age 76, both hemispheres 47.5
2692 Male, age 74, both hemispheres 46.7
Perirhinal gyrus
nTPM: 53.9
1847 Female, age 91, left hemisphere 58.5
1794 Male, age 80, right hemisphere 57.2
1841 Female, age 85, right hemisphere 54.0
2848 Male, age 76, right hemisphere 50.3
2521 Female, age 94, right hemisphere 49.4
Subiculum
nTPM: 46.3
2619 Male, age 74, both hemispheres 53.1
1901 Male, age 80, both hemispheres 47.5
1977 Female, age 85, both hemispheres 47.1
2438 Female, age 94, left hemisphere 43.7
2729 Female, age 91, right hemisphere 43.7
2042 Male, age 76, both hemispheres 42.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.9
Samples: 197

Max nTPM: 112.3
Min nTPM: 11.2
Std nTPM: 15.8
Median nTPM: 36.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 112.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 81.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 75.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 75.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 70.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 70.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 70.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 69.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 69.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 68.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 67.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 76.3
FF:10169-103B7 60 years, female 81.6
FF:10153-102I9 76 years, female 71.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 17.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 17.8
Samples: 4

Max nTPM: 21.0
Min nTPM: 15.4
Sample A Female 21.0
Sample B Female 19.0
Sample C Male 15.9
Sample D Male 15.4
Entorhinal cortex
nTPM: 16.6
Samples: 4

Max nTPM: 19.5
Min nTPM: 13.9
Sample A Female 15.8
Sample B Female 19.5
Sample C Male 17.1
Sample D Male 13.9
Subiculum
nTPM: 16.5
Samples: 4

Max nTPM: 21.3
Min nTPM: 14.1
Sample A Female 21.3
Sample B Female 15.0
Sample C Male 15.4
Sample D Male 14.1
Ventral hippocampus
nTPM: 17.5
Samples: 4

Max nTPM: 19.2
Min nTPM: 14.8
Sample A Female 17.9
Sample B Female 14.8
Sample C Male 19.2
Sample D Male 18.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 94.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 67.0
Samples: 4

Max nTPM: 72.6
Min nTPM: 62.6
Sample A Male 63.7
Sample B Male 68.9
Sample C Female 72.6
Sample D Female 62.6
Hippocampal formation
nTPM: 94.7
Samples: 4

Max nTPM: 103.4
Min nTPM: 81.5
Sample A Male 96.4
Sample B Male 97.5
Sample C Female 103.4
Sample D Female 81.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.0
68745552 Antisense, RP_050210_02_B08, Mouse strain C57BL/6J (56 days, male) 2.6
74819260 Antisense, RP_060315_02_D12, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.