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CDK16
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.4 nTPM
HPA:52.4 nTPM
GTEx:55.9 nTPM
FANTOM5:43.2 Scaled Tags Per Million
Pig:47.4 nTPM
Mouse:130.5 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.8
2019 Male, age 18, unknown 60.5
2586 Male, age 75, left hemisphere 56.6
2219 Male, age 76, both hemispheres 48.3
1827 Male, age 72, unknown 47.8
2828 Female, age 72, unknown 47.7
2666 Male, age 74, left hemisphere 46.9
1833 Male, age 53, unknown 37.9
1830 Male, age 51, unknown 35.2
1870 Female, age 42, unknown 33.8
2411 Female, age 72, unknown 33.7
Dorsal raphe nucleus
nTPM: 34.3
1828 Male, age 53, unknown 41.7
2750 Male, age 76, both hemispheres 36.8
2047 Male, age 72, unknown 35.0
2298 Female, age 72, unknown 29.4
2016 Female, age 72, unknown 28.6
Inferior colliculus
nTPM: 40.6
1890 Male, age 53, unknown 42.6
1848 Female, age 42, unknown 41.9
2097 Female, age 72, unknown 40.3
2849 Male, age 72, unknown 37.8
Median raphe nucleus
nTPM: 36.3
2220 Male, age 76, midline 36.3
Pedunculopontine tegmental nucleus
nTPM: 40.7
1921 Female, age 85, both hemispheres 41.7
2338 Male, age 61, both hemispheres 41.3
2334 Male, age 80, both hemispheres 39.2
Periaquaductal grey, anterior
nTPM: 43.5
1795 Male, age 51, unknown 47.4
1947 Male, age 18, unknown 44.8
2502 Female, age 75, unknown 38.4
Periaquaductal grey, dorsal
nTPM: 30.6
1831 Male, age 72, unknown 32.2
2464 Female, age 72, unknown 31.9
2850 Male, age 76, both hemispheres 29.4
1840 Male, age 53, unknown 28.8
Periaquaductal grey, lateral
nTPM: 30.3
2272 Male, age 74, both hemispheres 30.5
2140 Male, age 76, both hemispheres 30.4
2053 Male, age 18, unknown 30.1
Pretectal area
nTPM: 52.4
1817 Female, age 42, unknown 82.3
2007 Male, age 72, unknown 78.7
1944 Female, age 72, unknown 77.9
1816 Male, age 51, unknown 75.6
1815 Male, age 53, unknown 55.5
2667 Female, age 75, unknown 45.6
2407 Male, age 75, both hemispheres 40.8
2316 Male, age 76, right hemisphere 32.7
2825 Male, age 18, unknown 30.5
2224 Female, age 72, unknown 29.5
2273 Male, age 74, both hemispheres 27.1
Red nucleus
nTPM: 44.1
2785 Male, age 18, unknown 62.8
2584 Male, age 75, left hemisphere 49.1
2588 Male, age 74, left hemisphere 48.0
1821 Female, age 72, unknown 43.8
1865 Male, age 51, unknown 43.0
2503 Female, age 72, unknown 42.4
1954 Female, age 42, unknown 41.8
2823 Male, age 76, right hemisphere 41.5
2769 Male, age 72, unknown 40.1
2227 Male, age 72, unknown 40.0
1904 Male, age 53, unknown 39.0
2725 Female, age 75, unknown 37.4
Substantia nigra
nTPM: 45.9
1889 Female, age 72, unknown 62.1
2665 Male, age 74, both hemispheres 58.5
1916 Female, age 42, unknown 54.3
1941 Male, age 53, unknown 51.5
2583 Male, age 75, right hemisphere 47.8
1851 Male, age 51, unknown 45.3
2590 Female, age 75, unknown 41.6
2699 Male, age 18, unknown 33.9
2409 Female, age 72, unknown 33.0
2241 Male, age 72, unknown 31.4
Superior colliculus
nTPM: 46.6
2668 Female, age 75, unknown 68.1
2087 Female, age 72, unknown 63.6
2664 Male, age 75, both hemispheres 47.2
1796 Male, age 53, unknown 47.0
2261 Male, age 18, unknown 46.5
1913 Female, age 42, unknown 43.6
1995 Male, age 72, unknown 42.8
1895 Male, age 76, right hemisphere 38.3
1839 Male, age 51, unknown 35.6
2587 Male, age 74, left hemisphere 33.6
Ventral tegmental area
nTPM: 39.0
2410 Female, age 72, unknown 48.2
2218 Male, age 76, both hemispheres 44.2
1915 Female, age 42, unknown 39.4
2223 Female, age 72, unknown 36.4
1942 Male, age 51, unknown 35.8
2021 Male, age 53, unknown 29.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.9
Samples: 139

Max nTPM: 134.6
Min nTPM: 28.8
Std nTPM: 19.0
Median nTPM: 52.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 134.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 114.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 107.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 105.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 98.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 93.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 93.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 92.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 90.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 89.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 84.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.2
FF:10158-103A5 76 years, female 43.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.4
Pig sample Sample description nTPM
Midbrain
nTPM: 41.1
Samples: 4

Max nTPM: 67.9
Min nTPM: 22.2
Sample A Female 32.8
Sample B Female 22.2
Sample C Male 67.9
Sample D Male 41.6
Periaqueductal gray
nTPM: 20.2
Samples: 3

Max nTPM: 21.4
Min nTPM: 18.1
Sample B Female 21.2
Sample C Male 21.4
Sample D Male 18.1
Substantia nigra
nTPM: 28.3
Samples: 4

Max nTPM: 30.8
Min nTPM: 22.1
Sample A Female 29.7
Sample B Female 22.1
Sample C Male 30.4
Sample D Male 30.8
Superior colliculi
nTPM: 47.4
Samples: 4

Max nTPM: 65.3
Min nTPM: 34.8
Sample A Female 41.1
Sample B Female 34.8
Sample C Male 65.3
Sample D Male 48.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 130.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 130.6
Samples: 4

Max nTPM: 136.5
Min nTPM: 123.8
Sample A Male 129.6
Sample B Male 123.8
Sample C Female 136.5
Sample D Female 132.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
70429345 Antisense, RP_050614_01_E03, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.