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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.9 nTPM
HPA:5.9 nTPM
GTEx:10.4 nTPM
FANTOM5:48.6 Scaled Tags Per Million
Pig:6.4 nTPM
Mouse:16.7 nTPM
Allen mouse:8.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.9
1854 Male, age 80, left hemisphere 6.0
1857 Female, age 85, left hemisphere 5.7
1781 Male, age 74, unknown 4.8
2846 Female, age 79, unknown 4.8
2290 Female, age 72, unknown 4.4
2289 Male, age 61, right hemisphere 3.0
2288 Male, age 75, left hemisphere 1.9
2481 Female, age 94, left hemisphere 0.9
Claustrum
nTPM: 3.8
2568 Male, age 61, both hemispheres 5.2
2645 Female, age 72, unknown 5.1
2491 Male, age 75, both hemispheres 4.7
2284 Female, age 91, both hemispheres 4.0
1956 Male, age 74, unknown 3.9
2392 Female, age 94, both hemispheres 3.9
2196 Female, age 79, unknown 3.3
2198 Male, age 80, both hemispheres 3.1
2292 Female, age 85, both hemispheres 0.9
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
2483 Female, age 94, right hemisphere 0.5
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 4.9
1856 Female, age 91, right hemisphere 10.2
1783 Male, age 74, unknown 7.4
2824 Male, age 61, right hemisphere 7.4
1806 Female, age 85, left hemisphere 5.0
2698 Female, age 72, unknown 4.3
2286 Male, age 75, left hemisphere 2.2
2732 Male, age 80, right hemisphere 1.7
2391 Female, age 94, left hemisphere 0.7
Nucleus basalis of Meynert
nTPM: 2.5
2393 Male, age 80, right hemisphere 5.2
2484 Female, age 94, left hemisphere 3.3
2821 Male, age 75, both hemispheres 1.6
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 4.5
2029 Male, age 61, right hemisphere 7.6
1812 Female, age 91, both hemispheres 4.6
2775 Male, age 80, right hemisphere 4.5
2195 Female, age 85, both hemispheres 3.9
1979 Male, age 74, unknown 1.7
Olfactory tubercle
nTPM: 5.9
1998 Female, age 91, both hemispheres 6.8
2856 Male, age 75, right hemisphere 6.4
2487 Female, age 94, left hemisphere 5.5
1846 Male, age 80, right hemisphere 4.9
Putamen
nTPM: 4.3
1838 Male, age 80, right hemisphere 8.2
1937 Female, age 91, right hemisphere 6.5
2466 Female, age 79, unknown 5.4
1829 Male, age 74, unknown 5.3
2489 Female, age 72, unknown 2.6
2482 Female, age 94, left hemisphere 1.4
2647 Male, age 75, left hemisphere 0.9
Septal nuclei
nTPM: 3.5
2031 Female, age 72, unknown 6.3
2629 Female, age 94, right hemisphere 5.3
1960 Male, age 74, unknown 4.6
2009 Female, age 91, both hemispheres 4.1
2059 Female, age 85, both hemispheres 2.9
2394 Male, age 61, left hemisphere 0.7
2199 Male, age 80, right hemisphere 0.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.6
Samples: 246

Max nTPM: 16.1
Min nTPM: 1.0
Std nTPM: 3.2
Median nTPM: 6.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 16.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 14.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 14.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 14.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 13.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 13.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 13.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 13.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 13.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 13.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 13.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.4
Samples: 246

Max nTPM: 25.1
Min nTPM: 0.3
Std nTPM: 5.1
Median nTPM: 10.8
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 25.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 22.4
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 20.7
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 20.5
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 20.5
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 20.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 19.8
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 19.7
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 19.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 19.3
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 18.4
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Brain - Putamen (basal ganglia)
Average nTPM: 6.1
Samples: 205

Max nTPM: 16.2
Min nTPM: 0.7
Std nTPM: 3.3
Median nTPM: 5.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 16.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 14.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 13.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 13.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 13.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 13.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 12.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 12.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 12.6
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 12.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 12.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.0
FF:10164-103B2 76 years, female 39.0
Globus pallidus
Scaled Tags Per Million: 8.9
FF:10175-103C4 60 years, female 10.2
FF:10161-103A8 76 years, female 7.5
Nucleus accumbens
Scaled Tags Per Million: 48.6
FF:10037-101F1 23-56 years, mixed 48.6
Putamen
Scaled Tags Per Million: 36.9
FF:10176-103C5 60 years, female 36.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.4
Pig sample Sample description nTPM
Caudate
nTPM: 6.4
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 6.1
Sample C Male 7.1
Sample D Male 6.5
Putamen
nTPM: 6.3
Samples: 4

Max nTPM: 8.2
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 6.4
Sample C Male 8.2
Sample D Male 6.8
Septum
nTPM: 5.9
Samples: 4

Max nTPM: 8.3
Min nTPM: 3.6
Sample A Female 6.2
Sample B Female 5.6
Sample C Male 3.6
Sample D Male 8.3
Ventral pallidum
nTPM: 5.5
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.8
Sample A Female 6.4
Sample B Female 5.7
Sample C Male 4.8
Sample D Male 5.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.7
Samples: 4

Max nTPM: 17.2
Min nTPM: 15.9
Sample A Male 16.8
Sample B Male 15.9
Sample C Female 17.2
Sample D Female 17.0
Septum
nTPM: 12.5
Samples: 4

Max nTPM: 13.9
Min nTPM: 11.6
Sample A Male 12.4
Sample B Male 11.6
Sample C Female 12.1
Sample D Female 13.9
Ventral forebrain
nTPM: 16.0
Samples: 4

Max nTPM: 18.2
Min nTPM: 13.5
Sample A Male 17.6
Sample B Male 14.8
Sample C Female 13.5
Sample D Female 18.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.0
69671606 Antisense, RP_050428_01_H05, Mouse strain C57BL/6J (56 days, male) 8.0
Pallidum
Expression energy: 5.7
69671606 Antisense, RP_050428_01_H05, Mouse strain C57BL/6J (56 days, male) 5.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.