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FNDC3A
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:15.3 nTPM
HPA:15.3 nTPM
GTEx:12.0 nTPM
FANTOM5:113.8 Scaled Tags Per Million
Pig:39.8 nTPM
Mouse:17.4 nTPM
Allen mouse:7.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008927Antibody HPA012825
Glial cells Not detectedNot detected
Neuronal cells LowMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 15.3
Sample id Sample description nTPM
Hippocampus
nTPM: 13.2
1855 Male, age 76, left hemisphere 18.8
1898 Male, age 80, left hemisphere 13.7
2148 Female, age 91, left hemisphere 13.5
1911 Female, age 85, right hemisphere 12.3
2621 Female, age 67, right hemisphere 11.2
2529 Female, age 94, left hemisphere 9.7
Dentate gyrus
nTPM: 14.6
2010 Male, age 76, both hemispheres 18.6
2531 Female, age 67, both hemispheres 15.4
1927 Female, age 91, both hemispheres 14.8
2246 Female, age 85, both hemispheres 14.3
2528 Male, age 74, both hemispheres 14.3
2530 Female, age 94, left hemisphere 10.1
Entorhinal gyrus
nTPM: 10.4
1938 Female, age 85, left hemisphere 13.2
2117 Female, age 91, right hemisphere 12.5
1787 Male, age 76, left hemisphere 9.7
2764 Male, age 80, right hemisphere 9.0
2613 Female, age 94, left hemisphere 8.9
2686 Male, age 75, right hemisphere 8.9
Hippocampus, CA1
nTPM: 15.3
2045 Male, age 76, both hemispheres 27.6
1873 Female, age 85, both hemispheres 15.1
2082 Female, age 91, right hemisphere 12.0
2749 Male, age 80, left hemisphere 11.1
2527 Male, age 74, both hemispheres 10.8
Hippocampus, CA2
nTPM: 11.1
1892 Male, age 76, both hemispheres 16.1
2249 Male, age 74, both hemispheres 11.3
1963 Male, age 80, left hemisphere 10.7
2113 Female, age 91, right hemisphere 10.1
1940 Female, age 85, left hemisphere 9.9
2437 Female, age 94, left hemisphere 8.7
Hippocampus, CA3
nTPM: 14.8
1867 Male, age 76, both hemispheres 20.6
2620 Female, age 94, left hemisphere 19.5
1891 Female, age 85, both hemispheres 13.6
2137 Male, age 80, left hemisphere 11.8
2436 Male, age 74, both hemispheres 11.8
2861 Female, age 67, both hemispheres 11.5
Parahippocampal cortex
nTPM: 11.5
2693 Female, age 94, both hemispheres 15.7
2018 Male, age 76, both hemispheres 13.4
1933 Female, age 85, both hemispheres 13.0
1850 Male, age 80, both hemispheres 12.7
2250 Female, age 67, right hemisphere 11.7
2532 Female, age 72, left hemisphere 10.6
2692 Male, age 74, both hemispheres 10.6
1990 Female, age 91, right hemisphere 10.2
2245 Female, age 91, both hemispheres 9.3
2622 Female, age 67, right hemisphere 8.0
Perirhinal gyrus
nTPM: 13.2
2521 Female, age 94, right hemisphere 16.9
1841 Female, age 85, right hemisphere 13.0
1847 Female, age 91, left hemisphere 13.0
2848 Male, age 76, right hemisphere 12.5
1794 Male, age 80, right hemisphere 10.6
Subiculum
nTPM: 11.8
2729 Female, age 91, right hemisphere 14.8
1977 Female, age 85, both hemispheres 12.5
2438 Female, age 94, left hemisphere 11.4
2042 Male, age 76, both hemispheres 11.3
1901 Male, age 80, both hemispheres 10.6
2619 Male, age 74, both hemispheres 10.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.0
Samples: 197

Max nTPM: 22.6
Min nTPM: 6.7
Std nTPM: 2.6
Median nTPM: 11.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 22.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 21.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 20.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 19.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 17.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 17.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 17.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 17.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 16.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 16.6
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 16.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 113.8
FF:10169-103B7 60 years, female 122.4
FF:10153-102I9 76 years, female 105.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 39.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.4
Samples: 4

Max nTPM: 31.7
Min nTPM: 29.2
Sample A Female 31.7
Sample B Female 30.3
Sample C Male 30.2
Sample D Male 29.2
Entorhinal cortex
nTPM: 39.9
Samples: 4

Max nTPM: 42.2
Min nTPM: 38.2
Sample A Female 42.2
Sample B Female 39.3
Sample C Male 39.7
Sample D Male 38.2
Subiculum
nTPM: 39.8
Samples: 4

Max nTPM: 48.4
Min nTPM: 36.3
Sample A Female 48.4
Sample B Female 37.5
Sample C Male 37.1
Sample D Male 36.3
Ventral hippocampus
nTPM: 35.0
Samples: 4

Max nTPM: 40.7
Min nTPM: 27.8
Sample A Female 40.7
Sample B Female 31.7
Sample C Male 39.6
Sample D Male 27.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 17.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 17.5
Samples: 4

Max nTPM: 19.5
Min nTPM: 16.0
Sample A Male 16.0
Sample B Male 17.9
Sample C Female 16.4
Sample D Female 19.5
Hippocampal formation
nTPM: 14.4
Samples: 4

Max nTPM: 15.0
Min nTPM: 13.9
Sample A Male 14.3
Sample B Male 15.0
Sample C Female 14.4
Sample D Female 13.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.5
69672551 Antisense, RP_050428_04_A05, Mouse strain C57BL/6J (56 days, male) 7.5

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The Human Protein Atlas

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