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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:489.4 nTPM
HPA:489.4 nTPM
GTEx:206.2 nTPM
FANTOM5:130.2 Scaled Tags Per Million
Pig:50.8 nTPM
Mouse:44.6 nTPM
Allen mouse:10.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041862
Glial cells Low
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 489.4
Sample id Sample description nTPM
Hippocampus
nTPM: 402.2
2529 Female, age 94, left hemisphere 633.8
2621 Female, age 67, right hemisphere 527.3
2148 Female, age 91, left hemisphere 356.0
1898 Male, age 80, left hemisphere 324.1
1855 Male, age 76, left hemisphere 321.6
1911 Female, age 85, right hemisphere 250.3
Dentate gyrus
nTPM: 489.4
2530 Female, age 94, left hemisphere 867.5
2531 Female, age 67, both hemispheres 576.0
2010 Male, age 76, both hemispheres 574.9
2246 Female, age 85, both hemispheres 402.9
2528 Male, age 74, both hemispheres 351.6
1927 Female, age 91, both hemispheres 163.3
Entorhinal gyrus
nTPM: 364.7
2686 Male, age 75, right hemisphere 542.9
2764 Male, age 80, right hemisphere 462.6
2117 Female, age 91, right hemisphere 439.6
2613 Female, age 94, left hemisphere 339.8
1787 Male, age 76, left hemisphere 247.3
1938 Female, age 85, left hemisphere 156.0
Hippocampus, CA1
nTPM: 433.6
2749 Male, age 80, left hemisphere 786.6
2527 Male, age 74, both hemispheres 499.0
2045 Male, age 76, both hemispheres 360.5
1873 Female, age 85, both hemispheres 301.2
2082 Female, age 91, right hemisphere 220.6
Hippocampus, CA2
nTPM: 288.0
1963 Male, age 80, left hemisphere 399.9
1892 Male, age 76, both hemispheres 312.9
2437 Female, age 94, left hemisphere 309.9
2113 Female, age 91, right hemisphere 294.1
2249 Male, age 74, both hemispheres 256.9
1940 Female, age 85, left hemisphere 154.2
Hippocampus, CA3
nTPM: 424.0
2861 Female, age 67, both hemispheres 681.6
2137 Male, age 80, left hemisphere 461.4
2620 Female, age 94, left hemisphere 460.5
1867 Male, age 76, both hemispheres 381.5
2436 Male, age 74, both hemispheres 289.0
1891 Female, age 85, both hemispheres 269.8
Parahippocampal cortex
nTPM: 315.2
2018 Male, age 76, both hemispheres 609.1
2245 Female, age 91, both hemispheres 546.4
2532 Female, age 72, left hemisphere 423.2
2622 Female, age 67, right hemisphere 359.8
2692 Male, age 74, both hemispheres 284.5
1990 Female, age 91, right hemisphere 225.9
2250 Female, age 67, right hemisphere 222.9
1933 Female, age 85, both hemispheres 189.1
1850 Male, age 80, both hemispheres 170.7
2693 Female, age 94, both hemispheres 120.2
Perirhinal gyrus
nTPM: 176.4
2521 Female, age 94, right hemisphere 226.5
2848 Male, age 76, right hemisphere 186.2
1794 Male, age 80, right hemisphere 176.5
1841 Female, age 85, right hemisphere 159.5
1847 Female, age 91, left hemisphere 133.4
Subiculum
nTPM: 343.1
1977 Female, age 85, both hemispheres 593.5
2042 Male, age 76, both hemispheres 467.3
2619 Male, age 74, both hemispheres 429.4
2729 Female, age 91, right hemisphere 347.4
1901 Male, age 80, both hemispheres 220.7
2438 Female, age 94, left hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 206.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 206.2
Samples: 197

Max nTPM: 728.6
Min nTPM: 27.8
Std nTPM: 120.8
Median nTPM: 183.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 728.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 645.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 548.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 542.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 516.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 508.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 475.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 472.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 451.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 429.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 421.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 130.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 130.2
FF:10169-103B7 60 years, female 132.8
FF:10153-102I9 76 years, female 127.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 50.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 50.8
Samples: 4

Max nTPM: 77.9
Min nTPM: 16.3
Sample A Female 77.9
Sample B Female 35.9
Sample C Male 73.0
Sample D Male 16.3
Entorhinal cortex
nTPM: 21.6
Samples: 4

Max nTPM: 27.2
Min nTPM: 18.9
Sample A Female 19.7
Sample B Female 27.2
Sample C Male 18.9
Sample D Male 20.6
Subiculum
nTPM: 23.7
Samples: 4

Max nTPM: 27.2
Min nTPM: 20.4
Sample A Female 27.2
Sample B Female 26.0
Sample C Male 20.4
Sample D Male 21.2
Ventral hippocampus
nTPM: 33.9
Samples: 4

Max nTPM: 41.3
Min nTPM: 20.6
Sample A Female 39.7
Sample B Female 20.6
Sample C Male 33.9
Sample D Male 41.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 44.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.5
Samples: 4

Max nTPM: 42.8
Min nTPM: 14.7
Sample A Male 42.8
Sample B Male 30.4
Sample C Female 30.1
Sample D Female 14.7
Hippocampal formation
nTPM: 44.6
Samples: 4

Max nTPM: 59.2
Min nTPM: 36.6
Sample A Male 36.6
Sample B Male 38.0
Sample C Female 59.2
Sample D Female 44.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.8
1881 Antisense, RP_040604_01_D07, Mouse strain C57BL/6J (56 days, male) 10.8
1880 Antisense, RP_040604_01_D07, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.