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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.1 nTPM
HPA:54.1 nTPM
GTEx:62.5 nTPM
FANTOM5:103.5 Scaled Tags Per Million
Pig:65.2 nTPM
Mouse:123.9 nTPM
Allen mouse:8.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.1
1870 Female, age 42, unknown 54.0
2411 Female, age 72, unknown 53.7
2019 Male, age 18, unknown 53.0
1833 Male, age 53, unknown 51.2
1827 Male, age 72, unknown 51.0
2666 Male, age 74, left hemisphere 50.9
2219 Male, age 76, both hemispheres 50.1
2586 Male, age 75, left hemisphere 49.7
1830 Male, age 51, unknown 49.4
2828 Female, age 72, unknown 48.2
Dorsal raphe nucleus
nTPM: 50.7
2750 Male, age 76, both hemispheres 52.8
2298 Female, age 72, unknown 50.9
1828 Male, age 53, unknown 50.8
2047 Male, age 72, unknown 50.6
2016 Female, age 72, unknown 48.2
Inferior colliculus
nTPM: 51.1
2097 Female, age 72, unknown 53.5
1890 Male, age 53, unknown 50.8
1848 Female, age 42, unknown 50.5
2849 Male, age 72, unknown 49.5
Median raphe nucleus
nTPM: 51.9
2220 Male, age 76, midline 51.9
Pedunculopontine tegmental nucleus
nTPM: 52.5
2334 Male, age 80, both hemispheres 53.6
1921 Female, age 85, both hemispheres 53.0
2338 Male, age 61, both hemispheres 51.0
Periaquaductal grey, anterior
nTPM: 50.2
1947 Male, age 18, unknown 51.7
2502 Female, age 75, unknown 49.9
1795 Male, age 51, unknown 49.0
Periaquaductal grey, dorsal
nTPM: 48.6
2464 Female, age 72, unknown 50.4
1840 Male, age 53, unknown 49.1
2850 Male, age 76, both hemispheres 48.2
1831 Male, age 72, unknown 46.7
Periaquaductal grey, lateral
nTPM: 48.3
2140 Male, age 76, both hemispheres 48.8
2053 Male, age 18, unknown 48.5
2272 Male, age 74, both hemispheres 47.5
Pretectal area
nTPM: 51.0
1816 Male, age 51, unknown 54.6
2007 Male, age 72, unknown 54.6
1817 Female, age 42, unknown 53.8
1944 Female, age 72, unknown 52.7
1815 Male, age 53, unknown 52.6
2667 Female, age 75, unknown 50.2
2316 Male, age 76, right hemisphere 49.9
2224 Female, age 72, unknown 49.7
2825 Male, age 18, unknown 47.9
2273 Male, age 74, both hemispheres 47.6
2407 Male, age 75, both hemispheres 47.6
Red nucleus
nTPM: 52.4
1821 Female, age 72, unknown 55.8
2725 Female, age 75, unknown 55.0
2503 Female, age 72, unknown 54.0
2785 Male, age 18, unknown 53.3
1865 Male, age 51, unknown 52.5
1954 Female, age 42, unknown 52.5
2769 Male, age 72, unknown 51.8
2823 Male, age 76, right hemisphere 51.8
2227 Male, age 72, unknown 51.6
2588 Male, age 74, left hemisphere 51.4
1904 Male, age 53, unknown 51.1
2584 Male, age 75, left hemisphere 48.4
Substantia nigra
nTPM: 54.1
2241 Male, age 72, unknown 58.9
1916 Female, age 42, unknown 58.0
1851 Male, age 51, unknown 55.9
1889 Female, age 72, unknown 54.2
1941 Male, age 53, unknown 54.2
2409 Female, age 72, unknown 54.1
2583 Male, age 75, right hemisphere 52.4
2665 Male, age 74, both hemispheres 52.0
2699 Male, age 18, unknown 51.0
2590 Female, age 75, unknown 50.1
Superior colliculus
nTPM: 50.3
1895 Male, age 76, right hemisphere 52.7
2668 Female, age 75, unknown 52.5
2087 Female, age 72, unknown 52.3
2261 Male, age 18, unknown 51.5
1796 Male, age 53, unknown 51.1
1913 Female, age 42, unknown 49.7
2587 Male, age 74, left hemisphere 49.7
1839 Male, age 51, unknown 49.6
1995 Male, age 72, unknown 48.1
2664 Male, age 75, both hemispheres 45.8
Ventral tegmental area
nTPM: 52.2
2410 Female, age 72, unknown 54.6
1915 Female, age 42, unknown 54.1
2218 Male, age 76, both hemispheres 52.3
2223 Female, age 72, unknown 52.2
1942 Male, age 51, unknown 50.4
2021 Male, age 53, unknown 49.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.5
Samples: 139

Max nTPM: 95.4
Min nTPM: 41.2
Std nTPM: 10.0
Median nTPM: 60.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 95.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 88.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 87.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 86.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 84.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 83.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 82.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 82.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 80.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 79.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 79.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.5
FF:10158-103A5 76 years, female 103.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.2
Pig sample Sample description nTPM
Midbrain
nTPM: 65.2
Samples: 4

Max nTPM: 105.0
Min nTPM: 46.6
Sample A Female 105.0
Sample B Female 50.5
Sample C Male 58.8
Sample D Male 46.6
Periaqueductal gray
nTPM: 43.2
Samples: 3

Max nTPM: 46.2
Min nTPM: 41.6
Sample B Female 41.7
Sample C Male 46.2
Sample D Male 41.6
Substantia nigra
nTPM: 56.0
Samples: 4

Max nTPM: 68.8
Min nTPM: 42.5
Sample A Female 68.8
Sample B Female 42.5
Sample C Male 58.4
Sample D Male 54.3
Superior colliculi
nTPM: 56.5
Samples: 4

Max nTPM: 68.2
Min nTPM: 38.8
Sample A Female 63.6
Sample B Female 38.8
Sample C Male 68.2
Sample D Male 55.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 123.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 123.9
Samples: 4

Max nTPM: 127.5
Min nTPM: 119.4
Sample A Male 119.4
Sample B Male 124.5
Sample C Female 127.5
Sample D Female 124.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.2
71377824 Antisense, RP_050510_03_D05, Mouse strain C57BL/6J (56 days, male) 8.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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