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SLC7A6OS
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.7 nTPM
HPA:10.7 nTPM
GTEx:8.9 nTPM
FANTOM5:38.9 Scaled Tags Per Million
Pig:12.5 nTPM
Mouse:20.6 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.5
2411 Female, age 72, unknown 10.6
1830 Male, age 51, unknown 10.3
2019 Male, age 18, unknown 9.8
2219 Male, age 76, both hemispheres 9.8
2828 Female, age 72, unknown 9.7
1833 Male, age 53, unknown 9.6
1870 Female, age 42, unknown 9.5
1827 Male, age 72, unknown 9.1
2666 Male, age 74, left hemisphere 8.6
2586 Male, age 75, left hemisphere 8.4
Dorsal raphe nucleus
nTPM: 9.6
2750 Male, age 76, both hemispheres 10.3
1828 Male, age 53, unknown 9.8
2047 Male, age 72, unknown 9.4
2298 Female, age 72, unknown 9.3
2016 Female, age 72, unknown 9.0
Inferior colliculus
nTPM: 9.3
1890 Male, age 53, unknown 9.6
2097 Female, age 72, unknown 9.4
1848 Female, age 42, unknown 9.2
2849 Male, age 72, unknown 9.1
Median raphe nucleus
nTPM: 9.9
2220 Male, age 76, midline 9.9
Pedunculopontine tegmental nucleus
nTPM: 9.8
2338 Male, age 61, both hemispheres 10.2
2334 Male, age 80, both hemispheres 9.6
1921 Female, age 85, both hemispheres 9.5
Periaquaductal grey, anterior
nTPM: 9.2
1795 Male, age 51, unknown 9.5
2502 Female, age 75, unknown 9.3
1947 Male, age 18, unknown 8.9
Periaquaductal grey, dorsal
nTPM: 9.3
2464 Female, age 72, unknown 9.5
2850 Male, age 76, both hemispheres 9.3
1831 Male, age 72, unknown 9.1
1840 Male, age 53, unknown 9.1
Periaquaductal grey, lateral
nTPM: 9.3
2140 Male, age 76, both hemispheres 9.7
2272 Male, age 74, both hemispheres 9.2
2053 Male, age 18, unknown 9.0
Pretectal area
nTPM: 9.5
2316 Male, age 76, right hemisphere 11.2
2224 Female, age 72, unknown 10.1
2667 Female, age 75, unknown 9.9
1944 Female, age 72, unknown 9.8
2007 Male, age 72, unknown 9.7
2407 Male, age 75, both hemispheres 9.6
2825 Male, age 18, unknown 9.4
1817 Female, age 42, unknown 9.0
2273 Male, age 74, both hemispheres 9.0
1815 Male, age 53, unknown 8.7
1816 Male, age 51, unknown 8.4
Red nucleus
nTPM: 10.7
1865 Male, age 51, unknown 11.4
2227 Male, age 72, unknown 11.4
2769 Male, age 72, unknown 11.4
2823 Male, age 76, right hemisphere 11.4
1904 Male, age 53, unknown 11.0
2503 Female, age 72, unknown 11.0
1954 Female, age 42, unknown 10.4
2725 Female, age 75, unknown 10.3
2785 Male, age 18, unknown 10.3
2588 Male, age 74, left hemisphere 10.0
1821 Female, age 72, unknown 9.9
2584 Male, age 75, left hemisphere 9.6
Substantia nigra
nTPM: 9.9
2665 Male, age 74, both hemispheres 10.5
2409 Female, age 72, unknown 10.4
2699 Male, age 18, unknown 10.3
1916 Female, age 42, unknown 10.2
1851 Male, age 51, unknown 10.1
1941 Male, age 53, unknown 9.9
2590 Female, age 75, unknown 9.8
1889 Female, age 72, unknown 9.2
2583 Male, age 75, right hemisphere 9.2
2241 Male, age 72, unknown 9.1
Superior colliculus
nTPM: 9.6
1913 Female, age 42, unknown 11.3
1995 Male, age 72, unknown 9.9
2087 Female, age 72, unknown 9.9
2261 Male, age 18, unknown 9.9
1895 Male, age 76, right hemisphere 9.7
1796 Male, age 53, unknown 9.6
2587 Male, age 74, left hemisphere 9.6
2668 Female, age 75, unknown 9.4
1839 Male, age 51, unknown 8.7
2664 Male, age 75, both hemispheres 8.1
Ventral tegmental area
nTPM: 9.7
1942 Male, age 51, unknown 10.0
2218 Male, age 76, both hemispheres 9.9
2223 Female, age 72, unknown 9.9
1915 Female, age 42, unknown 9.8
2021 Male, age 53, unknown 9.8
2410 Female, age 72, unknown 9.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.9
Samples: 139

Max nTPM: 12.3
Min nTPM: 4.6
Std nTPM: 1.3
Median nTPM: 8.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 12.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 12.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 11.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 11.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 11.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 11.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 11.1
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 11.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 11.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 11.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 10.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.9
FF:10158-103A5 76 years, female 38.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.5
Pig sample Sample description nTPM
Midbrain
nTPM: 12.6
Samples: 4

Max nTPM: 17.7
Min nTPM: 10.2
Sample A Female 17.7
Sample B Female 11.8
Sample C Male 10.6
Sample D Male 10.2
Periaqueductal gray
nTPM: 10.3
Samples: 3

Max nTPM: 10.8
Min nTPM: 9.7
Sample B Female 10.5
Sample C Male 10.8
Sample D Male 9.7
Substantia nigra
nTPM: 11.0
Samples: 4

Max nTPM: 12.8
Min nTPM: 9.9
Sample A Female 12.8
Sample B Female 9.9
Sample C Male 10.6
Sample D Male 10.5
Superior colliculi
nTPM: 11.6
Samples: 4

Max nTPM: 12.5
Min nTPM: 10.5
Sample A Female 12.5
Sample B Female 10.5
Sample C Male 12.1
Sample D Male 11.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 22.4
Min nTPM: 19.0
Sample A Male 22.4
Sample B Male 21.3
Sample C Female 19.8
Sample D Female 19.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68667001 Antisense, RP_050201_01_D08, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.