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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.6 nTPM
HPA:47.6 nTPM
GTEx:80.9 nTPM
FANTOM5:65.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.9
2019 Male, age 18, unknown 49.9
2411 Female, age 72, unknown 48.2
2666 Male, age 74, left hemisphere 47.7
2828 Female, age 72, unknown 47.6
1870 Female, age 42, unknown 46.9
1827 Male, age 72, unknown 46.6
1830 Male, age 51, unknown 46.6
1833 Male, age 53, unknown 45.7
2219 Male, age 76, both hemispheres 45.2
2586 Male, age 75, left hemisphere 44.4
Dorsal raphe nucleus
nTPM: 47.3
2047 Male, age 72, unknown 48.8
2750 Male, age 76, both hemispheres 48.4
1828 Male, age 53, unknown 47.5
2298 Female, age 72, unknown 46.2
2016 Female, age 72, unknown 45.7
Inferior colliculus
nTPM: 46.1
2097 Female, age 72, unknown 47.5
1890 Male, age 53, unknown 46.7
1848 Female, age 42, unknown 45.9
2849 Male, age 72, unknown 44.2
Median raphe nucleus
nTPM: 46.9
2220 Male, age 76, midline 46.9
Pedunculopontine tegmental nucleus
nTPM: 47.0
1921 Female, age 85, both hemispheres 48.1
2334 Male, age 80, both hemispheres 47.5
2338 Male, age 61, both hemispheres 45.6
Periaquaductal grey, anterior
nTPM: 46.6
1947 Male, age 18, unknown 48.8
1795 Male, age 51, unknown 46.0
2502 Female, age 75, unknown 45.0
Periaquaductal grey, dorsal
nTPM: 44.6
2464 Female, age 72, unknown 44.9
1831 Male, age 72, unknown 44.8
1840 Male, age 53, unknown 44.5
2850 Male, age 76, both hemispheres 44.1
Periaquaductal grey, lateral
nTPM: 45.1
2272 Male, age 74, both hemispheres 45.6
2053 Male, age 18, unknown 45.2
2140 Male, age 76, both hemispheres 44.6
Pretectal area
nTPM: 47.6
1816 Male, age 51, unknown 50.9
2007 Male, age 72, unknown 50.6
2224 Female, age 72, unknown 49.7
1817 Female, age 42, unknown 49.2
1815 Male, age 53, unknown 48.4
1944 Female, age 72, unknown 48.0
2667 Female, age 75, unknown 48.0
2273 Male, age 74, both hemispheres 45.4
2316 Male, age 76, right hemisphere 44.8
2825 Male, age 18, unknown 44.8
2407 Male, age 75, both hemispheres 43.5
Red nucleus
nTPM: 47.3
1821 Female, age 72, unknown 48.8
2823 Male, age 76, right hemisphere 48.8
2503 Female, age 72, unknown 48.7
2725 Female, age 75, unknown 48.6
1954 Female, age 42, unknown 48.3
2785 Male, age 18, unknown 48.3
2227 Male, age 72, unknown 47.1
1904 Male, age 53, unknown 46.7
1865 Male, age 51, unknown 46.1
2769 Male, age 72, unknown 45.3
2584 Male, age 75, left hemisphere 45.2
2588 Male, age 74, left hemisphere 45.2
Substantia nigra
nTPM: 46.7
2409 Female, age 72, unknown 49.7
1889 Female, age 72, unknown 48.2
1941 Male, age 53, unknown 47.1
1916 Female, age 42, unknown 46.8
2665 Male, age 74, both hemispheres 46.7
1851 Male, age 51, unknown 46.4
2241 Male, age 72, unknown 46.3
2590 Female, age 75, unknown 46.2
2583 Male, age 75, right hemisphere 45.6
2699 Male, age 18, unknown 43.8
Superior colliculus
nTPM: 46.5
1895 Male, age 76, right hemisphere 48.7
2087 Female, age 72, unknown 48.3
1796 Male, age 53, unknown 46.9
1995 Male, age 72, unknown 46.6
2668 Female, age 75, unknown 46.5
2261 Male, age 18, unknown 46.3
2664 Male, age 75, both hemispheres 45.9
2587 Male, age 74, left hemisphere 45.7
1839 Male, age 51, unknown 44.9
1913 Female, age 42, unknown 44.7
Ventral tegmental area
nTPM: 46.3
1915 Female, age 42, unknown 48.2
2410 Female, age 72, unknown 47.2
1942 Male, age 51, unknown 47.0
2223 Female, age 72, unknown 45.4
2021 Male, age 53, unknown 45.1
2218 Male, age 76, both hemispheres 44.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 80.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.9
Samples: 139

Max nTPM: 170.9
Min nTPM: 48.7
Std nTPM: 19.8
Median nTPM: 77.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 170.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 165.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 138.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 127.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 119.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 119.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 115.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 115.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 114.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 108.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 107.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.8
FF:10158-103A5 76 years, female 65.8

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