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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.9 nTPM
HPA:9.9 nTPM
GTEx:14.7 nTPM
FANTOM5:40.6 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:4.4 nTPM
Allen mouse:1.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.9
2289 Male, age 61, right hemisphere 13.1
2290 Female, age 72, unknown 9.5
1857 Female, age 85, left hemisphere 8.9
1854 Male, age 80, left hemisphere 8.4
2288 Male, age 75, left hemisphere 8.2
1781 Male, age 74, unknown 8.1
2846 Female, age 79, unknown 7.6
2481 Female, age 94, left hemisphere 7.2
Claustrum
nTPM: 7.8
2645 Female, age 72, unknown 11.1
2568 Male, age 61, both hemispheres 9.1
2292 Female, age 85, both hemispheres 8.4
2491 Male, age 75, both hemispheres 8.1
2284 Female, age 91, both hemispheres 7.9
2198 Male, age 80, both hemispheres 7.0
2392 Female, age 94, both hemispheres 6.7
2196 Female, age 79, unknown 6.4
1956 Male, age 74, unknown 6.0
Globus pallidus, externus
nTPM: 8.8
2567 Female, age 72, unknown 11.3
2646 Male, age 61, right hemisphere 10.7
1996 Male, age 80, right hemisphere 8.3
2772 Female, age 79, unknown 7.0
2395 Male, age 75, both hemispheres 6.9
Globus pallidus, internus
nTPM: 8.1
2111 Female, age 85, right hemisphere 10.4
2566 Female, age 72, unknown 9.1
2778 Female, age 91, both hemispheres 8.5
1818 Male, age 74, unknown 7.9
2037 Male, age 80, right hemisphere 7.4
2287 Male, age 75, right hemisphere 6.7
2483 Female, age 94, right hemisphere 6.6
Nucleus accumbens
nTPM: 8.1
1783 Male, age 74, unknown 11.1
2824 Male, age 61, right hemisphere 9.4
1806 Female, age 85, left hemisphere 8.9
2732 Male, age 80, right hemisphere 8.7
1856 Female, age 91, right hemisphere 8.5
2286 Male, age 75, left hemisphere 6.3
2698 Female, age 72, unknown 5.9
2391 Female, age 94, left hemisphere 5.8
Nucleus basalis of Meynert
nTPM: 9.9
2569 Male, age 61, both hemispheres 12.5
2484 Female, age 94, left hemisphere 10.8
2821 Male, age 75, both hemispheres 8.5
2393 Male, age 80, right hemisphere 7.8
Nucleus of the diagonal band
nTPM: 6.6
2029 Male, age 61, right hemisphere 7.8
1979 Male, age 74, unknown 7.5
2195 Female, age 85, both hemispheres 7.1
1812 Female, age 91, both hemispheres 5.3
2775 Male, age 80, right hemisphere 5.1
Olfactory tubercle
nTPM: 6.6
2856 Male, age 75, right hemisphere 7.5
2487 Female, age 94, left hemisphere 7.1
1846 Male, age 80, right hemisphere 6.4
1998 Female, age 91, both hemispheres 5.3
Putamen
nTPM: 9.5
2489 Female, age 72, unknown 11.5
1838 Male, age 80, right hemisphere 11.1
2466 Female, age 79, unknown 10.6
2647 Male, age 75, left hemisphere 10.2
1829 Male, age 74, unknown 8.6
1937 Female, age 91, right hemisphere 8.0
2482 Female, age 94, left hemisphere 6.7
Septal nuclei
nTPM: 7.1
2394 Male, age 61, left hemisphere 9.2
2059 Female, age 85, both hemispheres 8.0
2199 Male, age 80, right hemisphere 7.4
1960 Male, age 74, unknown 7.2
2009 Female, age 91, both hemispheres 6.6
2031 Female, age 72, unknown 5.9
2629 Female, age 94, right hemisphere 5.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.9
Samples: 246

Max nTPM: 24.3
Min nTPM: 3.6
Std nTPM: 3.7
Median nTPM: 13.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 24.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 22.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 21.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 21.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 21.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 21.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 21.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 20.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 20.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 20.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 20.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.7
Samples: 246

Max nTPM: 38.3
Min nTPM: 4.5
Std nTPM: 4.2
Median nTPM: 14.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 38.3
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 27.0
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 26.9
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 24.4
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 22.9
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 22.9
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 22.8
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 22.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 22.3
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 22.1
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 21.8
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Brain - Putamen (basal ganglia)
Average nTPM: 14.3
Samples: 205

Max nTPM: 27.8
Min nTPM: 2.6
Std nTPM: 3.6
Median nTPM: 14.4
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 27.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 24.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 24.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 23.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 22.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 21.6
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 21.4
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 21.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 21.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 20.6
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 20.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.6
FF:10164-103B2 76 years, female 40.6
Globus pallidus
Scaled Tags Per Million: 34.7
FF:10161-103A8 76 years, female 39.5
FF:10175-103C4 60 years, female 29.9
Nucleus accumbens
Scaled Tags Per Million: 30.3
FF:10037-101F1 23-56 years, mixed 30.3
Putamen
Scaled Tags Per Million: 34.1
FF:10176-103C5 60 years, female 34.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.1
Pig sample Sample description nTPM
Caudate
nTPM: 2.9
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 3.3
Sample C Male 3.0
Sample D Male 2.9
Putamen
nTPM: 3.0
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.7
Sample A Female 3.4
Sample B Female 2.7
Sample C Male 2.8
Sample D Male 3.0
Septum
nTPM: 2.9
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.6
Sample A Female 2.9
Sample B Female 3.0
Sample C Male 3.1
Sample D Male 2.6
Ventral pallidum
nTPM: 3.1
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 2.9
Sample C Male 3.9
Sample D Male 3.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.4
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.2
Sample A Male 5.4
Sample B Male 4.1
Sample C Female 3.2
Sample D Female 5.0
Septum
nTPM: 3.1
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.3
Sample A Male 3.3
Sample B Male 3.9
Sample C Female 3.0
Sample D Female 2.3
Ventral forebrain
nTPM: 3.5
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.6
Sample A Male 3.9
Sample B Male 3.1
Sample C Female 4.5
Sample D Female 2.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.0
69262254 Antisense, RP_050301_02_A02, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 0.8
69262254 Antisense, RP_050301_02_A02, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.