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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.9 nTPM
HPA:77.9 nTPM
GTEx:72.5 nTPM
FANTOM5:31.7 Scaled Tags Per Million
Pig:2.5 nTPM
Mouse:1.3 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.6
2586 Male, age 75, left hemisphere 87.7
2828 Female, age 72, unknown 79.9
2666 Male, age 74, left hemisphere 76.7
2219 Male, age 76, both hemispheres 74.7
1833 Male, age 53, unknown 74.6
1870 Female, age 42, unknown 74.5
1827 Male, age 72, unknown 74.1
1830 Male, age 51, unknown 73.3
2411 Female, age 72, unknown 71.5
2019 Male, age 18, unknown 69.3
Dorsal raphe nucleus
nTPM: 76.6
2047 Male, age 72, unknown 79.7
2016 Female, age 72, unknown 79.4
1828 Male, age 53, unknown 76.1
2298 Female, age 72, unknown 75.6
2750 Male, age 76, both hemispheres 72.2
Inferior colliculus
nTPM: 77.3
2849 Male, age 72, unknown 82.0
1890 Male, age 53, unknown 77.9
1848 Female, age 42, unknown 75.7
2097 Female, age 72, unknown 73.7
Median raphe nucleus
nTPM: 76.9
2220 Male, age 76, midline 76.9
Pedunculopontine tegmental nucleus
nTPM: 75.1
2338 Male, age 61, both hemispheres 75.9
2334 Male, age 80, both hemispheres 75.5
1921 Female, age 85, both hemispheres 74.0
Periaquaductal grey, anterior
nTPM: 75.4
1795 Male, age 51, unknown 77.3
2502 Female, age 75, unknown 76.0
1947 Male, age 18, unknown 72.9
Periaquaductal grey, dorsal
nTPM: 77.9
2850 Male, age 76, both hemispheres 81.7
1840 Male, age 53, unknown 79.0
2464 Female, age 72, unknown 76.3
1831 Male, age 72, unknown 74.6
Periaquaductal grey, lateral
nTPM: 75.5
2140 Male, age 76, both hemispheres 78.2
2053 Male, age 18, unknown 77.1
2272 Male, age 74, both hemispheres 71.1
Pretectal area
nTPM: 73.7
2825 Male, age 18, unknown 77.3
2224 Female, age 72, unknown 75.4
1816 Male, age 51, unknown 74.2
2407 Male, age 75, both hemispheres 74.1
2316 Male, age 76, right hemisphere 74.0
2667 Female, age 75, unknown 73.9
1817 Female, age 42, unknown 73.0
1944 Female, age 72, unknown 72.8
1815 Male, age 53, unknown 72.6
2007 Male, age 72, unknown 71.8
2273 Male, age 74, both hemispheres 71.6
Red nucleus
nTPM: 73.8
2584 Male, age 75, left hemisphere 78.0
2227 Male, age 72, unknown 76.3
2725 Female, age 75, unknown 75.9
2769 Male, age 72, unknown 75.5
2503 Female, age 72, unknown 75.1
1954 Female, age 42, unknown 74.1
1904 Male, age 53, unknown 74.0
2588 Male, age 74, left hemisphere 72.6
1821 Female, age 72, unknown 72.0
2823 Male, age 76, right hemisphere 71.4
1865 Male, age 51, unknown 71.0
2785 Male, age 18, unknown 69.5
Substantia nigra
nTPM: 76.3
2699 Male, age 18, unknown 88.5
2665 Male, age 74, both hemispheres 82.9
2583 Male, age 75, right hemisphere 78.4
1851 Male, age 51, unknown 76.6
1916 Female, age 42, unknown 75.3
2590 Female, age 75, unknown 73.8
2409 Female, age 72, unknown 73.3
1889 Female, age 72, unknown 72.4
1941 Male, age 53, unknown 71.9
2241 Male, age 72, unknown 69.3
Superior colliculus
nTPM: 74.4
2664 Male, age 75, both hemispheres 81.1
1995 Male, age 72, unknown 76.3
2587 Male, age 74, left hemisphere 74.7
1796 Male, age 53, unknown 74.4
1839 Male, age 51, unknown 73.7
1913 Female, age 42, unknown 73.6
2261 Male, age 18, unknown 73.5
2668 Female, age 75, unknown 73.0
2087 Female, age 72, unknown 72.3
1895 Male, age 76, right hemisphere 71.8
Ventral tegmental area
nTPM: 75.2
2021 Male, age 53, unknown 79.1
1942 Male, age 51, unknown 77.2
1915 Female, age 42, unknown 77.1
2223 Female, age 72, unknown 74.6
2218 Male, age 76, both hemispheres 73.7
2410 Female, age 72, unknown 69.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.5
Samples: 139

Max nTPM: 145.0
Min nTPM: 17.3
Std nTPM: 26.0
Median nTPM: 69.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 145.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 142.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 132.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 124.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 123.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 120.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 120.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 120.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 118.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 114.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 113.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.7
FF:10158-103A5 76 years, female 31.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.5
Pig sample Sample description nTPM
Midbrain
nTPM: 2.2
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 2.4
Sample C Male 1.8
Sample D Male 2.8
Periaqueductal gray
nTPM: 2.1
Samples: 3

Max nTPM: 2.3
Min nTPM: 1.9
Sample B Female 1.9
Sample C Male 2.3
Sample D Male 2.0
Substantia nigra
nTPM: 2.2
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.7
Sample A Female 2.2
Sample B Female 2.6
Sample C Male 2.4
Sample D Male 1.7
Superior colliculi
nTPM: 2.5
Samples: 4

Max nTPM: 2.7
Min nTPM: 2.3
Sample A Female 2.4
Sample B Female 2.7
Sample C Male 2.4
Sample D Male 2.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.3
Samples: 4

Max nTPM: 1.5
Min nTPM: 1.2
Sample A Male 1.2
Sample B Male 1.5
Sample C Female 1.2
Sample D Female 1.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68443519 Antisense, RP_050111_02_B08, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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