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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:360.3 nTPM
HPA:360.3 nTPM
GTEx:424.5 nTPM
FANTOM5:55.8 Scaled Tags Per Million
Pig:162.4 nTPM
Mouse:307.9 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 360.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 346.9
2411 Female, age 72, unknown 358.9
2586 Male, age 75, left hemisphere 358.2
2019 Male, age 18, unknown 354.7
2219 Male, age 76, both hemispheres 349.5
1870 Female, age 42, unknown 345.6
1827 Male, age 72, unknown 345.2
2828 Female, age 72, unknown 344.1
1833 Male, age 53, unknown 343.1
1830 Male, age 51, unknown 334.8
2666 Male, age 74, left hemisphere 334.8
Dorsal raphe nucleus
nTPM: 349.2
2298 Female, age 72, unknown 363.0
2047 Male, age 72, unknown 350.8
2750 Male, age 76, both hemispheres 350.7
1828 Male, age 53, unknown 346.2
2016 Female, age 72, unknown 335.4
Inferior colliculus
nTPM: 343.2
1890 Male, age 53, unknown 348.5
2097 Female, age 72, unknown 347.4
2849 Male, age 72, unknown 339.7
1848 Female, age 42, unknown 337.1
Median raphe nucleus
nTPM: 358.8
2220 Male, age 76, midline 358.8
Pedunculopontine tegmental nucleus
nTPM: 353.2
2334 Male, age 80, both hemispheres 357.5
1921 Female, age 85, both hemispheres 355.2
2338 Male, age 61, both hemispheres 347.0
Periaquaductal grey, anterior
nTPM: 360.3
2502 Female, age 75, unknown 364.7
1795 Male, age 51, unknown 359.2
1947 Male, age 18, unknown 357.0
Periaquaductal grey, dorsal
nTPM: 338.5
1840 Male, age 53, unknown 344.1
2850 Male, age 76, both hemispheres 341.6
2464 Female, age 72, unknown 336.7
1831 Male, age 72, unknown 331.7
Periaquaductal grey, lateral
nTPM: 345.1
2272 Male, age 74, both hemispheres 361.7
2053 Male, age 18, unknown 340.8
2140 Male, age 76, both hemispheres 332.8
Pretectal area
nTPM: 352.8
2007 Male, age 72, unknown 367.8
1944 Female, age 72, unknown 366.3
1817 Female, age 42, unknown 364.4
1816 Male, age 51, unknown 362.4
2667 Female, age 75, unknown 358.0
2273 Male, age 74, both hemispheres 354.7
1815 Male, age 53, unknown 351.8
2224 Female, age 72, unknown 348.8
2407 Male, age 75, both hemispheres 339.4
2825 Male, age 18, unknown 335.1
2316 Male, age 76, right hemisphere 332.4
Red nucleus
nTPM: 349.1
2503 Female, age 72, unknown 364.8
2785 Male, age 18, unknown 359.0
1865 Male, age 51, unknown 355.8
1821 Female, age 72, unknown 353.7
1904 Male, age 53, unknown 351.5
2769 Male, age 72, unknown 351.3
2227 Male, age 72, unknown 349.3
2725 Female, age 75, unknown 347.5
1954 Female, age 42, unknown 345.0
2588 Male, age 74, left hemisphere 340.3
2823 Male, age 76, right hemisphere 339.4
2584 Male, age 75, left hemisphere 330.9
Substantia nigra
nTPM: 356.2
1916 Female, age 42, unknown 373.1
1851 Male, age 51, unknown 369.6
1889 Female, age 72, unknown 368.4
2409 Female, age 72, unknown 361.5
2699 Male, age 18, unknown 357.0
1941 Male, age 53, unknown 355.0
2241 Male, age 72, unknown 351.3
2665 Male, age 74, both hemispheres 345.9
2590 Female, age 75, unknown 344.7
2583 Male, age 75, right hemisphere 335.4
Superior colliculus
nTPM: 348.6
1796 Male, age 53, unknown 356.8
2587 Male, age 74, left hemisphere 356.2
2087 Female, age 72, unknown 355.0
2261 Male, age 18, unknown 353.8
2668 Female, age 75, unknown 350.6
1913 Female, age 42, unknown 348.7
1995 Male, age 72, unknown 345.8
2664 Male, age 75, both hemispheres 343.3
1839 Male, age 51, unknown 337.9
1895 Male, age 76, right hemisphere 337.5
Ventral tegmental area
nTPM: 359.5
2410 Female, age 72, unknown 374.0
1915 Female, age 42, unknown 364.4
2218 Male, age 76, both hemispheres 361.7
2223 Female, age 72, unknown 359.4
1942 Male, age 51, unknown 354.9
2021 Male, age 53, unknown 342.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 424.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 424.5
Samples: 139

Max nTPM: 1272.5
Min nTPM: 197.2
Std nTPM: 129.9
Median nTPM: 400.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1272.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 955.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 680.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 671.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 665.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 645.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 637.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 630.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 627.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 624.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 614.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.8
FF:10158-103A5 76 years, female 55.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 162.4
Pig sample Sample description nTPM
Midbrain
nTPM: 146.3
Samples: 4

Max nTPM: 199.8
Min nTPM: 124.3
Sample A Female 199.8
Sample B Female 133.5
Sample C Male 124.3
Sample D Male 127.6
Periaqueductal gray
nTPM: 107.1
Samples: 3

Max nTPM: 122.7
Min nTPM: 93.7
Sample B Female 105.0
Sample C Male 122.7
Sample D Male 93.7
Substantia nigra
nTPM: 133.8
Samples: 4

Max nTPM: 188.1
Min nTPM: 104.4
Sample A Female 188.1
Sample B Female 113.2
Sample C Male 129.4
Sample D Male 104.4
Superior colliculi
nTPM: 162.4
Samples: 4

Max nTPM: 220.6
Min nTPM: 133.9
Sample A Female 220.6
Sample B Female 151.4
Sample C Male 143.6
Sample D Male 133.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 307.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 307.9
Samples: 4

Max nTPM: 365.3
Min nTPM: 248.1
Sample A Male 365.3
Sample B Male 274.6
Sample C Female 248.1
Sample D Female 343.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
74822929 Antisense, RP_060321_01_A02, Mouse strain C57BL/6J (56 days, male) 7.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.