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RPGRIP1L
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:2.2 nTPM
HPA:2.2 nTPM
GTEx:4.0 nTPM
FANTOM5:31.6 Scaled Tags Per Million
Pig:13.4 nTPM
Mouse:12.8 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039405
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.6
1857 Female, age 85, left hemisphere 2.7
2846 Female, age 79, unknown 2.2
2289 Male, age 61, right hemisphere 2.0
2288 Male, age 75, left hemisphere 1.9
2290 Female, age 72, unknown 1.8
1854 Male, age 80, left hemisphere 1.7
1781 Male, age 74, unknown 0.2
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 0.6
2568 Male, age 61, both hemispheres 1.7
2284 Female, age 91, both hemispheres 1.5
2491 Male, age 75, both hemispheres 0.9
2645 Female, age 72, unknown 0.9
1956 Male, age 74, unknown 0.5
2198 Male, age 80, both hemispheres 0.3
2196 Female, age 79, unknown 0.1
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 1.4
1856 Female, age 91, right hemisphere 2.6
2824 Male, age 61, right hemisphere 2.2
2732 Male, age 80, right hemisphere 1.6
2698 Female, age 72, unknown 1.4
1783 Male, age 74, unknown 1.3
2286 Male, age 75, left hemisphere 1.3
1806 Female, age 85, left hemisphere 1.0
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.9
2393 Male, age 80, right hemisphere 2.1
2821 Male, age 75, both hemispheres 0.8
2484 Female, age 94, left hemisphere 0.6
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 2.2
1979 Male, age 74, unknown 2.9
2029 Male, age 61, right hemisphere 2.8
2195 Female, age 85, both hemispheres 2.5
2775 Male, age 80, right hemisphere 1.6
1812 Female, age 91, both hemispheres 1.1
Olfactory tubercle
nTPM: 1.9
2856 Male, age 75, right hemisphere 3.1
1998 Female, age 91, both hemispheres 1.9
1846 Male, age 80, right hemisphere 1.4
2487 Female, age 94, left hemisphere 1.1
Putamen
nTPM: 1.7
1838 Male, age 80, right hemisphere 2.2
1937 Female, age 91, right hemisphere 2.1
2489 Female, age 72, unknown 2.0
1829 Male, age 74, unknown 1.9
2647 Male, age 75, left hemisphere 1.7
2466 Female, age 79, unknown 1.6
2482 Female, age 94, left hemisphere 0.7
Septal nuclei
nTPM: 1.3
2629 Female, age 94, right hemisphere 2.0
1960 Male, age 74, unknown 1.9
2009 Female, age 91, both hemispheres 1.6
2199 Male, age 80, right hemisphere 1.3
2031 Female, age 72, unknown 1.2
2059 Female, age 85, both hemispheres 0.9
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.5
Samples: 246

Max nTPM: 9.2
Min nTPM: 1.0
Std nTPM: 1.2
Median nTPM: 3.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 9.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 7.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 7.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 6.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 6.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 6.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 6.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 6.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 6.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 6.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 5.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.0
Samples: 246

Max nTPM: 9.1
Min nTPM: 1.1
Std nTPM: 1.1
Median nTPM: 4.0
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 9.1
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 8.3
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 7.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 6.7
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 6.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 6.4
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 6.2
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 6.2
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 6.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 6.0
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 6.0
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Brain - Putamen (basal ganglia)
Average nTPM: 2.8
Samples: 205

Max nTPM: 7.1
Min nTPM: 0.7
Std nTPM: 0.9
Median nTPM: 2.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 7.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 5.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 5.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 4.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 4.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 4.6
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 4.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 4.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 4.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 4.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 4.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.6
FF:10164-103B2 76 years, female 28.6
Globus pallidus
Scaled Tags Per Million: 15.5
FF:10175-103C4 60 years, female 23.6
FF:10161-103A8 76 years, female 7.4
Nucleus accumbens
Scaled Tags Per Million: 19.2
FF:10037-101F1 23-56 years, mixed 19.2
Putamen
Scaled Tags Per Million: 31.6
FF:10176-103C5 60 years, female 31.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.4
Pig sample Sample description nTPM
Caudate
nTPM: 12.2
Samples: 4

Max nTPM: 13.9
Min nTPM: 9.0
Sample A Female 13.3
Sample B Female 9.0
Sample C Male 13.9
Sample D Male 12.7
Putamen
nTPM: 13.4
Samples: 4

Max nTPM: 20.9
Min nTPM: 8.8
Sample A Female 8.8
Sample B Female 11.5
Sample C Male 20.9
Sample D Male 12.3
Septum
nTPM: 9.7
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.7
Sample A Female 9.1
Sample B Female 8.7
Sample C Male 9.7
Sample D Male 11.3
Ventral pallidum
nTPM: 9.2
Samples: 4

Max nTPM: 11.5
Min nTPM: 7.7
Sample A Female 11.5
Sample B Female 7.7
Sample C Male 8.1
Sample D Male 9.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.8
Samples: 4

Max nTPM: 19.6
Min nTPM: 8.0
Sample A Male 8.0
Sample B Male 14.8
Sample C Female 8.9
Sample D Female 19.6
Septum
nTPM: 7.5
Samples: 4

Max nTPM: 8.8
Min nTPM: 6.4
Sample A Male 7.6
Sample B Male 6.4
Sample C Female 7.0
Sample D Female 8.8
Ventral forebrain
nTPM: 11.7
Samples: 4

Max nTPM: 16.3
Min nTPM: 7.7
Sample A Male 11.0
Sample B Male 16.3
Sample C Female 7.7
Sample D Female 11.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69353714 Antisense, RP_050412_02_F02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69353714 Antisense, RP_050412_02_F02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.