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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:36.2 nTPM
HPA:36.2 nTPM
GTEx:26.6 nTPM
FANTOM5:35.1 Scaled Tags Per Million
Pig:7.1 nTPM
Mouse:38.9 nTPM
Allen mouse:10.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001330
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.3
2481 Female, age 94, left hemisphere 33.8
2288 Male, age 75, left hemisphere 31.5
2846 Female, age 79, unknown 31.4
1854 Male, age 80, left hemisphere 31.2
2290 Female, age 72, unknown 31.0
1781 Male, age 74, unknown 30.8
2289 Male, age 61, right hemisphere 30.8
1857 Female, age 85, left hemisphere 29.7
Claustrum
nTPM: 32.6
2292 Female, age 85, both hemispheres 34.4
2645 Female, age 72, unknown 34.4
1956 Male, age 74, unknown 33.7
2196 Female, age 79, unknown 33.1
2198 Male, age 80, both hemispheres 32.4
2392 Female, age 94, both hemispheres 32.0
2568 Male, age 61, both hemispheres 31.9
2284 Female, age 91, both hemispheres 30.9
2491 Male, age 75, both hemispheres 30.8
Globus pallidus, externus
nTPM: 36.2
2567 Female, age 72, unknown 38.4
2395 Male, age 75, both hemispheres 37.2
2772 Female, age 79, unknown 35.7
1996 Male, age 80, right hemisphere 35.6
2646 Male, age 61, right hemisphere 34.3
Globus pallidus, internus
nTPM: 35.4
2111 Female, age 85, right hemisphere 37.5
2566 Female, age 72, unknown 37.0
2778 Female, age 91, both hemispheres 36.5
2287 Male, age 75, right hemisphere 35.7
1818 Male, age 74, unknown 34.1
2037 Male, age 80, right hemisphere 34.1
2483 Female, age 94, right hemisphere 32.8
Nucleus accumbens
nTPM: 31.2
2391 Female, age 94, left hemisphere 33.4
2698 Female, age 72, unknown 33.1
1806 Female, age 85, left hemisphere 31.5
2286 Male, age 75, left hemisphere 31.0
1783 Male, age 74, unknown 30.6
1856 Female, age 91, right hemisphere 30.6
2732 Male, age 80, right hemisphere 30.5
2824 Male, age 61, right hemisphere 29.1
Nucleus basalis of Meynert
nTPM: 33.0
2821 Male, age 75, both hemispheres 34.1
2569 Male, age 61, both hemispheres 33.7
2484 Female, age 94, left hemisphere 32.5
2393 Male, age 80, right hemisphere 31.8
Nucleus of the diagonal band
nTPM: 31.6
1812 Female, age 91, both hemispheres 33.1
2775 Male, age 80, right hemisphere 32.3
2195 Female, age 85, both hemispheres 32.1
2029 Male, age 61, right hemisphere 30.5
1979 Male, age 74, unknown 29.8
Olfactory tubercle
nTPM: 31.5
1846 Male, age 80, right hemisphere 32.2
2487 Female, age 94, left hemisphere 31.9
1998 Female, age 91, both hemispheres 31.5
2856 Male, age 75, right hemisphere 30.5
Putamen
nTPM: 32.0
2647 Male, age 75, left hemisphere 34.2
2482 Female, age 94, left hemisphere 33.9
1829 Male, age 74, unknown 32.8
2489 Female, age 72, unknown 31.5
2466 Female, age 79, unknown 31.1
1838 Male, age 80, right hemisphere 30.6
1937 Female, age 91, right hemisphere 30.0
Septal nuclei
nTPM: 31.5
2629 Female, age 94, right hemisphere 32.3
1960 Male, age 74, unknown 31.7
2059 Female, age 85, both hemispheres 31.7
2394 Male, age 61, left hemisphere 31.6
2199 Male, age 80, right hemisphere 31.4
2009 Female, age 91, both hemispheres 31.2
2031 Female, age 72, unknown 30.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.3
Samples: 246

Max nTPM: 37.5
Min nTPM: 13.9
Std nTPM: 4.1
Median nTPM: 23.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 37.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 37.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 37.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 35.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 33.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 32.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 32.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 32.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 31.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 31.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 31.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.8
Samples: 246

Max nTPM: 65.3
Min nTPM: 13.5
Std nTPM: 5.0
Median nTPM: 22.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 65.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 35.5
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 33.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 33.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 33.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 33.0
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 32.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 32.9
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 32.1
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 32.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 31.9
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Brain - Putamen (basal ganglia)
Average nTPM: 26.6
Samples: 205

Max nTPM: 42.5
Min nTPM: 15.2
Std nTPM: 4.4
Median nTPM: 26.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 42.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 39.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 39.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 37.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 35.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 35.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 35.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 35.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 35.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 34.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 34.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.1
FF:10164-103B2 76 years, female 35.1
Globus pallidus
Scaled Tags Per Million: 27.3
FF:10161-103A8 76 years, female 40.4
FF:10175-103C4 60 years, female 14.2
Nucleus accumbens
Scaled Tags Per Million: 21.8
FF:10037-101F1 23-56 years, mixed 21.8
Putamen
Scaled Tags Per Million: 28.4
FF:10176-103C5 60 years, female 28.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.1
Pig sample Sample description nTPM
Caudate
nTPM: 6.9
Samples: 4

Max nTPM: 7.3
Min nTPM: 6.4
Sample A Female 7.3
Sample B Female 7.3
Sample C Male 6.4
Sample D Male 6.7
Putamen
nTPM: 7.0
Samples: 4

Max nTPM: 7.9
Min nTPM: 6.1
Sample A Female 7.9
Sample B Female 7.1
Sample C Male 6.1
Sample D Male 6.7
Septum
nTPM: 6.9
Samples: 4

Max nTPM: 7.0
Min nTPM: 6.8
Sample A Female 6.9
Sample B Female 6.8
Sample C Male 6.8
Sample D Male 7.0
Ventral pallidum
nTPM: 7.1
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 6.9
Sample C Male 7.6
Sample D Male 7.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 38.9
Samples: 4

Max nTPM: 42.4
Min nTPM: 36.0
Sample A Male 39.8
Sample B Male 42.4
Sample C Female 37.2
Sample D Female 36.0
Septum
nTPM: 31.8
Samples: 4

Max nTPM: 36.8
Min nTPM: 28.7
Sample A Male 31.3
Sample B Male 28.7
Sample C Female 30.5
Sample D Female 36.8
Ventral forebrain
nTPM: 35.9
Samples: 4

Max nTPM: 37.5
Min nTPM: 34.5
Sample A Male 36.0
Sample B Male 37.5
Sample C Female 35.5
Sample D Female 34.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.2
576415 Antisense, RP_040826_01_G01, Mouse strain C57BL/6J (56 days, male) 10.2
Pallidum
Expression energy: 8.9
576415 Antisense, RP_040826_01_G01, Mouse strain C57BL/6J (56 days, male) 8.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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